Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1222 ATGGAAGACAAAAACAAAAACCTATTGGCATCACAAGACTTGGCCACTAACTTAACAGCACTTGTTGTAGATGACAATATTATAAACCGAAAGATTCATCAAAAGTTGTTGAAGAATGCTGGACTCAAAAATCAAGGAGTTGGAAATGGTAAAGAAGCAGTAGATATTCATTGCTATGGACAAAGCTTTGACCTAATTCTCATGGACATGGATATGCCCATAATGAATGGCATTGAGGCAACAAAGAAACTACGTTCAATGGGAATTTGTAGTATGATAGTTGGTGTGTCATCACGTTCTATGGAATCAGAAATACAACAATTTATGGAAGCAGGACTTGATGATTACCAAGTCAAACCCTTAACAATAACTAAGCTTAGTTCAATTCTTCATAAGATCAAACACTAA 408 0.3529 MEDKNKNLLASQDLATNLTALVVDDNIINRKIHQKLLKNAGLKNQGVGNGKEAVDIHCYGQSFDLILMDMDMPIMNGIEATKKLRSMGICSMIVGVSSRSMESEIQQFMEAGLDDYQVKPLTITKLSSILHKIKH* 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1222 135 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 10 134 - -
Lan5g1222 135 Gene3D - 2 135 - -
Lan5g1222 135 CDD REC_hyHK_CKI1_RcsC-like 21 130 - -
Lan5g1222 135 PANTHER TWO-COMPONENT RESPONSE REGULATOR 10 134 - -
Lan5g1222 135 Pfam Response regulator receiver domain 21 129 IPR001789 GO:0000160
Lan5g1222 135 SMART REC_2 18 130 IPR001789 GO:0000160
Lan5g1222 135 SUPERFAMILY CheY-like 17 133 IPR011006 -
Lan5g1222 135 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1222 Lan-Chr5 26077934 26079380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g1222 18 130 Response Regulator Gene Family AT3G04280 46.957 1.47e-28 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lan5g1222 Response_reg 8.6e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1222 - - adu:107491646 184.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0468 9 6985006 6986170 Lan5g1222 5 26077934 26079380 LSH