Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1221 ATGGGAGACGAAGATATAATGGAACTGCTATGGCAAAACGGTGAAGTTGTGATGCAGAGTCAGAGTCATCGACCTATGAGAAAACCGCCACCGCTTCCGCCGTCCAGAATCTCCGGTGGTGCAATTCCTGCCGGCACATCAATTCGACCTGAAGCTGTGAACTACAATAATACTCAAAATCTGTTCATGCAAGAAGATGGGATAACTTCATGGCTTCATTATCCAATGGATGATCCTCCATTGGATCAAACGTTCTGCACCGATTTACTCTACGCGCCGCCGCCAACGGTTAACGCTAATAACCACAAGGATGATAACAACAACAGCATTGCAATGCAGAAATTTGGTCGAAATTCTCAGTTGACGGAGCTCCGGAAGTGTCAGAAATCGGTAGCTTCTCGTCCTCCGATTCCACCGCCGAGGAGGACGGAGCAGGCGGCGCCATCTAGTTCGAGGAACATTGCAAGGGAATCAACTATGGTGGATTCGAGTAGCAGCGGCGAAATAGATCGGAAATTGACGGCGGAAGATCGGAAACGGAAGGGGCGAGTGGAAGCGGTAGAATGGGAGAGTCAGAGCGAGGATGTTGATTTTGAATCTGCTGAAGCCAAAAAACAAATTCGTGGATCATCTACAAAGAGATCCCGTGCTGCAGAGGTCCATAATCTCTCTGAGAGGAAGCGTCGTGATCGGATTAATGAAAAGATGAGAGCTCTGCAAGAACTTATACCACGTTGTAACAAGTCTGACAAAGCTTCAATGCTGGATGACGCAATTGAATACTTGAAGTCACTGCAGTTACAAGTGCAGATGATGTCCATGGGATGTGGCATGGTACCTATGATGTTTGCTGGAATGCATCCATATATGCCAGCAATGGCAATGGGAATGGGTATGGGTATGGACATGGGAATGAACAGACCAGTAATGCCATTTCCTAATGTGTTAGCCGGTTCGGCATTGCCAGCAGCAACTGCAGCTGCTCATTTGGGACCAAGGTTTCCTATGCCTCCTTTCCATATGCCTCATGTTCCTGCACCTGATTCATCTCAAATGCAAGCAACAAATCAGTCAGATAATAGTATGCTCAACTCAGTTGGCACACCTGTTCTAAATCAGTCATGTATCCCAAACTTCAATAGTCCTTATCAATACCTTGGCCCCCACCAGATGCAGTTTCAATTAATGCAGAATCAGGCAATGAACCAGCTAAATGTTAACAAGCCAAGTACCAGTAGGGCCCCTGAGAATCCAGAACATCATCAGTCAGGTTAG 1275 0.4675 MGDEDIMELLWQNGEVVMQSQSHRPMRKPPPLPPSRISGGAIPAGTSIRPEAVNYNNTQNLFMQEDGITSWLHYPMDDPPLDQTFCTDLLYAPPPTVNANNHKDDNNNSIAMQKFGRNSQLTELRKCQKSVASRPPIPPPRRTEQAAPSSSRNIARESTMVDSSSSGEIDRKLTAEDRKRKGRVEAVEWESQSEDVDFESAEAKKQIRGSSTKRSRAAEVHNLSERKRRDRINEKMRALQELIPRCNKSDKASMLDDAIEYLKSLQLQVQMMSMGCGMVPMMFAGMHPYMPAMAMGMGMGMDMGMNRPVMPFPNVLAGSALPAATAAAHLGPRFPMPPFHMPHVPAPDSSQMQATNQSDNSMLNSVGTPVLNQSCIPNFNSPYQYLGPHQMQFQLMQNQAMNQLNVNKPSTSRAPENPEHHQSG* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1221 424 MobiDBLite consensus disorder prediction 343 365 - -
Lan5g1221 424 SMART finulus 222 271 IPR011598 GO:0046983
Lan5g1221 424 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 3 165 - -
Lan5g1221 424 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 157 424 - -
Lan5g1221 424 Pfam Helix-loop-helix DNA-binding domain 220 266 IPR011598 GO:0046983
Lan5g1221 424 MobiDBLite consensus disorder prediction 197 225 - -
Lan5g1221 424 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 214 283 IPR036638 GO:0046983
Lan5g1221 424 MobiDBLite consensus disorder prediction 123 225 - -
Lan5g1221 424 MobiDBLite consensus disorder prediction 348 365 - -
Lan5g1221 424 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 157 424 IPR031066 -
Lan5g1221 424 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 3 165 IPR031066 -
Lan5g1221 424 MobiDBLite consensus disorder prediction 144 168 - -
Lan5g1221 424 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 216 265 IPR011598 GO:0046983
Lan5g1221 424 Gene3D - 211 274 IPR036638 GO:0046983
Lan5g1221 424 CDD bHLH_AtPIF_like 216 279 - -
Lan5g1221 424 MobiDBLite consensus disorder prediction 169 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1221 Lan-Chr5 26068056 26073777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g1221 3 420 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G28800 33.693 5.41e-55 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan5g1221 HLH 3.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1221 - - gmx:100797225 417.927
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0465 9 6954791 6960221 Lan5g1221 5 26068056 26073777 LSH
Lan5g1221 5 26068056 26073777 Lan11g1372 11 21058568 21065480 PCT
Lan11g1372 11 21058568 21065480 Lan5g1221 5 26068056 26073777 PCT