Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1193 ATGGGTTGGATTCCATGTTCTGGAGGAGCTTCAGGCACTAAGAATAATAAGAAGAAGAAGATAAAGGAGAATATTGATAAGATTGATCAGATCAAACCTTCTCAAGGGAAGTTGAAGAGGAACTTATCTACAAGTTCCAAGGATACATCTAAAAATGGGAACCCCGATCATATTGCTGCGCAGACTTTCTCATTCCGTGAGTTAGCAACGGCTACTAGAAATTTTAGAGCAGAATGTCTTTTAGGTGAGGGAGGTTTTGGTAGAGTTTACAAAGGGCGTTTGGAAAGTATTAATCAGGTTGTCGCAATTAAGCAACTTGACCGAAATGGACTGCAAGGGAATAGAGAATTCCTTGTTGAAGTTTTGATGTTAAGTCTACTTCACCACTCTAACCTTGTCAACCTTATTGGTTATTGTGCTGATGGAGATCAAAGGCTTCTAGTTTATGAATATATGCCATTAGGATCCTTGGAAGACCACTTGCATGATATTCCTCCTGGCAAGAAACAACTTGACTGGAACACACGAATGAAAATAGCTGCCGGGGCAGCAAAGGGATTGGAATACCTACATGACAGAGCTAACCCACCTGTCATATACCGAGATTTAAAGTGCTCCAACATTTTGCTCGGTGAAGGGTACCATCCAAAGTTATCTGATTTCGGTTTGGCTAAACTTGGTCCAGTCGGGGAGAACACCCATGTATCAACAAGGGTTATGGGAACCTATGGATATTGTGCTCCAGAGTATGCAATGACTGGTCAACTGACTCTGAAATCAGATGTTTATAGCTTCGGCGTAGTTCTTCTGGAAATAATTACTGGAAGGAAAGCGATTGACAATTCAAAATCTGCAGCAGAGCAGAATCTTGTTGCATGGGCTAGACCTTTGTTTAAAGATAGAAGAAAATTCTCACAAATGGCTGATCCAATGCTCCAAGGTCAATATCCTCCAAGAGGGTTATACCAAGCCCTTGCTGTTGCAGCAATGTGTGTTCAAGAGCAGGCTAATATGAGGCCAGTTATAGCTGATGTTGTCACTGCTTTGTCTTACCTTGCTTCACAAAGATATGATCATATTACACAAAATGCTCAAAACTCTCACTCTTCTCCTAATACTCCTCCTAGAACAAGGAGAGGACAATGA 1146 0.4127 MGWIPCSGGASGTKNNKKKKIKENIDKIDQIKPSQGKLKRNLSTSSKDTSKNGNPDHIAAQTFSFRELATATRNFRAECLLGEGGFGRVYKGRLESINQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHSNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDIPPGKKQLDWNTRMKIAAGAAKGLEYLHDRANPPVIYRDLKCSNILLGEGYHPKLSDFGLAKLGPVGENTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSKSAAEQNLVAWARPLFKDRRKFSQMADPMLQGQYPPRGLYQALAVAAMCVQEQANMRPVIADVVTALSYLASQRYDHITQNAQNSHSSPNTPPRTRRGQ* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1193 381 MobiDBLite consensus disorder prediction 361 381 - -
Lan5g1193 381 CDD STKc_IRAK 81 349 - -
Lan5g1193 381 ProSitePatterns Protein kinases ATP-binding region signature. 81 104 IPR017441 GO:0005524
Lan5g1193 381 Gene3D Transferase(Phosphotransferase) domain 1 152 373 - -
Lan5g1193 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Lan5g1193 381 SUPERFAMILY Protein kinase-like (PK-like) 61 364 IPR011009 -
Lan5g1193 381 ProSiteProfiles Protein kinase domain profile. 75 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan5g1193 381 PANTHER OS07G0668900 PROTEIN 1 379 - -
Lan5g1193 381 MobiDBLite consensus disorder prediction 1 56 - -
Lan5g1193 381 MobiDBLite consensus disorder prediction 16 34 - -
Lan5g1193 381 Gene3D Phosphorylase Kinase; domain 1 45 151 - -
Lan5g1193 381 MobiDBLite consensus disorder prediction 36 56 - -
Lan5g1193 381 Pfam Protein tyrosine and serine/threonine kinase 79 347 IPR001245 GO:0004672|GO:0006468
Lan5g1193 381 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL7-RELATED 1 379 - -
Lan5g1193 381 SMART serkin_6 75 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1193 Lan-Chr5 25917277 25920774 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g1193 56 354 Glycoside Hydrolase AT3G07070 71.572 3.45e-164 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Lan5g1193 PK_Tyr_Ser-Thr 1.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1193 - - gmx:100793549 669.463