Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1190 ATGGCGGCAGCAGCAGCAGCTCGTCCACTTGTCACCGTTCAAGTCGTCACCGGCGACAATGCCACAGACTCCGCCCCCACCGTCGCCCTCCCCGACGTCATGAAGGCCTCAATCCGCCCCGACATCGTCAACTTCGTTCACTCCAACATCTCTCGCAACAGCCGCCAACCCTACGCCGTGAGCCGCAAAGCCGGTCATCAAACCTCCGCCGAGTCCTGGGGAACCGGCCGAGCCGTCTCCCGTATCCCTCGTGTCTCCGGTGGCGGTACTCACCGTGCCGGTCAGGCAGCCTTCGGAAACATGTGCCGCGGCGGTCGCATGTTTGCACCAACCAGGATCTGGCGCCGCTGGCACCGCAAAGTTAACATCAACCAAAAGCGCTACGCCGTCGTCTCCGCCATCGCCGCCTCCGCAATCCCCTCTCTGGTACAAGCCCGTGGACACAAAATCGAGACTGTCCCTGAGCTTCCCTTAGTCGTCAGCGACACCATCGAAGGCGTCGAGAAGAGCAAGGAAGCAATCAAGGTTTTGAAAGAAATCGGAGCTTTTGGCGATGCCGAGAAAGCAAAAGATAGCCGCGGAATTCGTCCTGGTAAGGGTAAAATGCGTAACCGTCGCTACATTTCACGCAAGGGACCTCTAATTGTGTATGGAACCGAAGGCGCGAAAGCGGTTAAGGCTTTTAGGAACATTCCAGGCGTTGAGATCGCCAATGTTGAGAGGCTGAACCTTCTGAAACTGGCACCAGGCGGTCACCTAGGTCGCTTCGTGGTTTGGACTAAATCGGCTTTCGAGAAATTGGATTCGATCTATGGAACATTCGAGAAGGCTTCGGAGAAGAAGAAGGGTTACGTGTTGCCAAGGTCGAAGTTGGTGAATGCTGACTTGGCTAGGATTATTAACTCTGATGAGGTTCAGTCAGTGGTGAAGCCTATTAAGAAAGAGGTTAAGAGGAGTGGTATTAAGAAGAATCCGCTAAAGAATTTGAATGTTCTGTTGAAGCTGAATCCGTATGCGAAAACTGCGAAGAGGATGGCTCTTTTGGCCGAGAAGCAGCGTGTTACTGCGAAGCAGGAGAAACTCCAAAAGAAGCGAACCAATGTCTCTAAGGAGGAGGCTTCTGCTATCAAGGCTGCAGGAAAAGCATGGTATCAAACTATGGTTTCTGACTCTGATTATGCTGAATTTGACAACTTCTCCAAGTGGCTGGGTGTTTCACAGTGA 1224 0.5302 MAAAAAARPLVTVQVVTGDNATDSAPTVALPDVMKASIRPDIVNFVHSNISRNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVSGGGTHRAGQAAFGNMCRGGRMFAPTRIWRRWHRKVNINQKRYAVVSAIAASAIPSLVQARGHKIETVPELPLVVSDTIEGVEKSKEAIKVLKEIGAFGDAEKAKDSRGIRPGKGKMRNRRYISRKGPLIVYGTEGAKAVKAFRNIPGVEIANVERLNLLKLAPGGHLGRFVVWTKSAFEKLDSIYGTFEKASEKKKGYVLPRSKLVNADLARIINSDEVQSVVKPIKKEVKRSGIKKNPLKNLNVLLKLNPYAKTAKRMALLAEKQRVTAKQEKLQKKRTNVSKEEASAIKAAGKAWYQTMVSDSDYAEFDNFSKWLGVSQ* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1190 407 MobiDBLite consensus disorder prediction 56 93 - -
Lan5g1190 407 PANTHER 60S RIBOSOMAL PROTEIN L4 3 407 IPR045240 -
Lan5g1190 407 Coils Coil 344 371 - -
Lan5g1190 407 Pfam Ribosomal protein L4/L1 family 29 268 IPR002136 GO:0003735|GO:0005840|GO:0006412
Lan5g1190 407 Gene3D - 5 310 IPR023574 GO:0003735|GO:0005840|GO:0006412
Lan5g1190 407 SUPERFAMILY Ribosomal protein L4 22 269 IPR023574 GO:0003735|GO:0005840|GO:0006412
Lan5g1190 407 Pfam 60S ribosomal protein L4 C-terminal domain 282 353 IPR025755 -
Lan5g1190 407 ProSitePatterns Ribosomal protein L1e signature. 122 148 IPR013000 -
Lan5g1190 407 PANTHER BNAC03G35890D PROTEIN 3 407 - -
Lan5g1190 407 MobiDBLite consensus disorder prediction 56 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1190 Lan-Chr5 25903171 25905171 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g1190 3 407 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 80.741 0.0 675
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1190 K02930 - gmx:100779764 692.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0437 9 6679403 6681572 Lan5g1190 5 25903171 25905171 LSH
Lan5g1190 5 25903171 25905171 Lan11g1405 11 22291364 22293648 PCT
Lan5g1190 5 25903171 25905171 Lan20g1050 20 11556339 11558422 PCT
Lan11g1405 11 22291364 22293648 Lan5g1190 5 25903171 25905171 PCT
Lan20g1050 20 11556339 11558422 Lan5g1190 5 25903171 25905171 PCT