LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan5g1189	ATGTTGGATCTCAACCTCAACAACACTCTTCATTTTGAATCTTCTCTTAGCTTCAATTCCTCTTCTTCCATTCTCAACCCTACCGATACCGATGATTCTTCTTCCTTCGATAACACCACCGCTTTTCCCTACAACTTCCCCATTCTCAACTCCGTCAATCATTCTCATATTCCTACTATTCAGCTTTTTCCGCCTGCCGGAGATGTGCAACAGTTGCCGGAACCGCCGTGTTCGGTTATTGCGTCGCAGAGGATAATTACTTCTCAGACGCAGCAGAAACAGGTTGTGAAGAAGAGTCGTCGTGGACCGAGGTCACGGAGTTCGCAGTATCGTGGCGTTACGTTTTATCGAAGAACGGGACGATGGGAATCGCATATTTGGGATTGTGGAAAACAAGTGTACTTAGGTGGATTTGATACAGCGCATGCTGCGGCAAGGGCATATGATCGAGCTGCAATCAAGTTTCGTGGGGTTGATGCAGATATCAATTTTAATGTCAGTGATTATGATGAAGATATAAAACAGATGGGTAACTTCACAAAAGAAGAGTTTGTGCATATTCTGCGTAGACAGAGCACTGGTTTTTCAAGGGGAAGCTCCAAATACAGGGGAGTTACTCTGCATAAATGTGGCAGGTGGGAAGCACGCATGGGACAGTTTCTCGGGAAAAAGTATATATATCTTGGCCTATTTGATAGCGAATTAGACGCCGCAAGAGCATATGATATGGCTGCTATAAAATGTAATGGAAGGGAAGCAGTGACTCATTTGAAAGAGGAGGCTTCTGCTATCAAGGCTGCAGGAAAAGCATGGTATCAAACTATGGTTTCTGACTCTGATTATGCTGAATTTGACAACTTCTCCAAGTGGCTGGGTGTTTCACAGTGA	888	0.4437	MLDLNLNNTLHFESSLSFNSSSSILNPTDTDDSSSFDNTTAFPYNFPILNSVNHSHIPTIQLFPPAGDVQQLPEPPCSVIASQRIITSQTQQKQVVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNVSDYDEDIKQMGNFTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSELDAARAYDMAAIKCNGREAVTHLKEEASAIKAAGKAWYQTMVSDSDYAEFDNFSKWLGVSQ*	296

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan5g1189	295	ProSiteProfiles	AP2/ERF domain profile.	201	258	IPR001471	GO:0003700\|GO:0006355
	Lan5g1189	295	SUPERFAMILY	DNA-binding domain	200	256	IPR016177	GO:0003677
	Lan5g1189	295	SMART	rav1_2	201	264	IPR001471	GO:0003700\|GO:0006355
	Lan5g1189	295	SMART	rav1_2	109	171	IPR001471	GO:0003700\|GO:0006355
	Lan5g1189	295	MobiDBLite	consensus disorder prediction	90	109	-	-
	Lan5g1189	295	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	1	257	-	-
	Lan5g1189	295	Pfam	AP2 domain	109	157	IPR001471	GO:0003700\|GO:0006355
	Lan5g1189	295	Pfam	AP2 domain	200	250	IPR001471	GO:0003700\|GO:0006355
	Lan5g1189	295	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7	1	257	-	-
	Lan5g1189	295	SUPERFAMILY	DNA-binding domain	108	167	IPR016177	GO:0003677
	Lan5g1189	295	CDD	AP2	200	255	IPR001471	GO:0003700\|GO:0006355
	Lan5g1189	295	Gene3D	AP2/ERF domain	200	258	IPR036955	GO:0003700\|GO:0006355
	Lan5g1189	295	Gene3D	AP2/ERF domain	108	167	IPR036955	GO:0003700\|GO:0006355
	Lan5g1189	295	CDD	AP2	109	167	IPR001471	GO:0003700\|GO:0006355
	Lan5g1189	295	ProSiteProfiles	AP2/ERF domain profile.	109	165	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan5g1189	Lan-Chr5	25897180	25899490	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan5g1189	85	257	AP2-EREBP Transcription Factor Family	AT4G36920	83.237	3.20e-89	270

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-AP2	Lan5g1189		AP2	5.7e-09	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan5g1189	K09284		-	gmx:100797238	339.347