Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1188 ATGTTGGATCTCAACCTCAACAACACTCTTCATTTTGAATCTTCTCTTAGCTTCAATTCCTCTTCTTCCATTCTCAACCCTACCGATACCGATGATTCTTCTTCCTTCGATAACACCACCGCTTTTCCCTACAACTTCCCCATTCTCAACTCCGTCAATCATTCTCATATTCCTACTATTCAGCTTTTTCCGCCTGCCGGAGATGTGCAACAGTTGCCGGAACCGCCGTGTTCGGTTATTGCGTCGCAGAGGATAATTACTTCTCAGACGCAGCAGAAACAGGTTGTGAAGAAGAGTCGTCGTGGACCGAGGTCACGGAGTTCGCAGTATCGTGGCGTTACGTTTTATCGAAGAACGGGACGATGGGAATCGCATATTTGGGATTGTGGAAAACAAGTGTACTTAGGTGGATTTGATACAGCGCATGCTGCGGCAAGGGCATATGATCGAGCTGCAATCAAGTTTCGTGGGGTTGATGCAGATATCAATTTTAATGTCAGTGATTATGATGAAGATATAAAACAGATGGGTAACTTCACAAAAGAAGAGTTTGTGCATATTCTGCGTAGACAGAGCACTGGTTTTTCAAGGGGAAGCTCCAAATACAGGGGAGTTACTCTGCATAAATGTGGCAGGTGGGAAGCACGCATGGGACAGTTTCTCGGGAAAAAAGCATATGATATGGCTGCTATAAAATGTAATGGAAGGGAAGCAGTAACAAACTTCGAGGCCAGCTCATATGAAGGGGAGGTAATTTCTCAGGCTGATAATGAAGATAGCGAGCTAATTCTTGATCTTAACTTGGGCATAGCTCCCCCATCATATGATGGCCAAATCAAGAACATGCACAACAATGAGAGTGGTTTACAAGTTCAGCGTAGCTGGGACGACATCCCTATTGATAGTAGACTTATGTTTGAGCATTCTGGACCAAGACCAATGATGGCTCAGCCATCTCACGGCTTCTCCCTAGCATCCGAGCATCCTCCACTCCGGAATGGTACAAATTTCCTTCCCATCTGCAAGGAAAGAGCAATAGAGAATAGGATGGAAACAGATCCCTTAGCAAATAGGGCATGGCAACTCCAAGGTCCTTATGGAGGGGCACCTCTTATTCCACCATTCTCTGCTGCAGCATCATCAGGATTCCCTTCAACAATAATACCATCAGCTGCGGAAAGTCAACTTCATTTTCCAAATATGATGTTCTTCAACCCTCATTTCCCTCCCTCAATCCCCAACTCCAGCACCATACCCAATTTCTACTGCAGGAGCTGA 1278 0.4531 MLDLNLNNTLHFESSLSFNSSSSILNPTDTDDSSSFDNTTAFPYNFPILNSVNHSHIPTIQLFPPAGDVQQLPEPPCSVIASQRIITSQTQQKQVVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNVSDYDEDIKQMGNFTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKAYDMAAIKCNGREAVTNFEASSYEGEVISQADNEDSELILDLNLGIAPPSYDGQIKNMHNNESGLQVQRSWDDIPIDSRLMFEHSGPRPMMAQPSHGFSLASEHPPLRNGTNFLPICKERAIENRMETDPLANRAWQLQGPYGGAPLIPPFSAAASSGFPSTIIPSAAESQLHFPNMMFFNPHFPPSIPNSSTIPNFYCRS* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1188 425 SUPERFAMILY DNA-binding domain 200 244 IPR016177 GO:0003677
Lan5g1188 425 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 12 418 - -
Lan5g1188 425 SMART rav1_2 109 171 IPR001471 GO:0003700|GO:0006355
Lan5g1188 425 SMART rav1_2 201 249 IPR001471 GO:0003700|GO:0006355
Lan5g1188 425 MobiDBLite consensus disorder prediction 90 109 - -
Lan5g1188 425 CDD AP2 200 245 IPR001471 GO:0003700|GO:0006355
Lan5g1188 425 SUPERFAMILY DNA-binding domain 108 167 IPR016177 GO:0003677
Lan5g1188 425 Pfam AP2 domain 109 157 IPR001471 GO:0003700|GO:0006355
Lan5g1188 425 Gene3D AP2/ERF domain 200 244 IPR036955 GO:0003700|GO:0006355
Lan5g1188 425 Gene3D AP2/ERF domain 108 167 IPR036955 GO:0003700|GO:0006355
Lan5g1188 425 CDD AP2 109 167 IPR001471 GO:0003700|GO:0006355
Lan5g1188 425 ProSiteProfiles AP2/ERF domain profile. 109 165 IPR001471 GO:0003700|GO:0006355
Lan5g1188 425 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 12 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1188 Lan-Chr5 25890354 25893330 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g1188 94 269 AP2-EREBP Transcription Factor Family AT4G36920 73.711 9.06e-78 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan5g1188 AP2 5.8e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1188 K09284 - gmx:100797238 517.309