Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1180 ATGCTTAAACTCGTTGGTTTCTCGTTACCAATGGAGGGAATGTTGTATGCAATCTTCATTCTCAATTTCGTTTTGGTTTGTCAATTCATTCTCCTTCAACCTCTTGTTTCTGCTTCAGGTGGACAACCCGGAAATTCTGCCGAGTTGTTTGAGAGGGTATCTGAAAGTATAAAAGTGAAACATTATACTGAGGCCCTTAATGATCTCAATGCTGCAATAGAAGCAGATCCAAACCTTTCAGAAGCATACCTTTTCCGTGCTTCAGTTCTTCGTCAGTTATGCAGATATGATCAATCCGAGAGAAGCTACAAAAAGTTTCTGGAGTTAAAACCTGAACATTCAGCTGCAGAAAAGGAGCTCTCTCAACTATTTCAGGCAAAAAGTGCCCTAGAAACAGCTCATTCCCTATATGATTTGGGAAACTTCACAAAATCTGTGGAATATATTGATAAAGTCGTACTTGTTTTTTCTCCGGCTTGCACTAAGGCCAAGCTTCTTAAAGTGAAGCTGTTGATAGCTGATAAAGATTATGAGGGTGCCATTGCTGAGTCTGGGTTTATTCTCAAGGAAGATGAAAATAATTTAGAGGCGTTGTTGTTACGTGGCCGTGCATATTACTATTTAGCTGATCACGATGTTGCCACAAGGCATTTCCAGAAAGGTCTCCGTCTAGATCCAGAGCACAGCGAACTAAAAAAAGCATATTTTGGATTGAAAAAACTACTCAAGAAGAGTAAAAGTGCTGAAGATATTGCGAGTAAGGGTAAGTTGCGTGTGGCAGTGGAGGAATTCAAAGGCGCACTTGCGATTGACCCTGACCATCTTGCACATAATGTGAACCTTCATCTTGGCTTATGTAAAGTGTTAGTCAGGCTTGGCAGAGGAAATGATGCCTTGGACAGTTGTAGTGAAGCTCTTAAGATTAATGAGGAACTTACCGAAGCTCTTGTTCAGAGAGGAGAAGCTAAACTCTTAACAGAGGATTGGGAGGGAGCAGTGGAGGATCTGAAATCGGCTGCTGAAAAATCTCCTCAGGATATGAATATCCGTGAAGCATTTATGAGGGCCCAGAAAGCTTTAAAGATGAGCAAACGCAAGGATTACTACAAGATTCTAGGAATTTCGAAAACTGCTTCCGCTGCTGAAATCAAACGTGCCTACAAGAAACTTGCCTTGCAATGGCACCCAGATAAGAATGTAGGCAACAGGGAAGAAGCAGAGGCTAAATTCCGAGAAATTGCTGGTGCATATGAGGTTCTCAGCGACGAAGACAAGCGCGTTAGATATGACAGAGGGGAGGACCTTGAAGACGCAGGAGGAATGGGCGGCGGTGGAGGTTTCAACCCTTATGGCCAAGGAGGGCAGCAGTATACTTTCACTTTCGAAGATGGCTTTCCCGGTGGTGGCGGATTTGGCGGGGGCTTTCCGGGTGGGTACGAGTTTCATTTTTGA 1452 0.4346 MLKLVGFSLPMEGMLYAIFILNFVLVCQFILLQPLVSASGGQPGNSAELFERVSESIKVKHYTEALNDLNAAIEADPNLSEAYLFRASVLRQLCRYDQSERSYKKFLELKPEHSAAEKELSQLFQAKSALETAHSLYDLGNFTKSVEYIDKVVLVFSPACTKAKLLKVKLLIADKDYEGAIAESGFILKEDENNLEALLLRGRAYYYLADHDVATRHFQKGLRLDPEHSELKKAYFGLKKLLKKSKSAEDIASKGKLRVAVEEFKGALAIDPDHLAHNVNLHLGLCKVLVRLGRGNDALDSCSEALKINEELTEALVQRGEAKLLTEDWEGAVEDLKSAAEKSPQDMNIREAFMRAQKALKMSKRKDYYKILGISKTASAAEIKRAYKKLALQWHPDKNVGNREEAEAKFREIAGAYEVLSDEDKRVRYDRGEDLEDAGGMGGGGGFNPYGQGGQQYTFTFEDGFPGGGGFGGGFPGGYEFHF* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1180 483 Pfam Tetratricopeptide repeat 196 228 IPR013105 -
Lan5g1180 483 Gene3D DnaJ domain 365 474 IPR036869 -
Lan5g1180 483 Pfam DnaJ domain 367 430 IPR001623 -
Lan5g1180 483 SUPERFAMILY Chaperone J-domain 360 471 IPR036869 -
Lan5g1180 483 Gene3D Tetratricopeptide repeat domain 38 364 IPR011990 GO:0005515
Lan5g1180 483 SUPERFAMILY TPR-like 55 361 IPR011990 GO:0005515
Lan5g1180 483 SMART tpr_5 80 113 IPR019734 GO:0005515
Lan5g1180 483 SMART tpr_5 195 228 IPR019734 GO:0005515
Lan5g1180 483 SMART tpr_5 46 79 IPR019734 GO:0005515
Lan5g1180 483 SMART tpr_5 279 312 IPR019734 GO:0005515
Lan5g1180 483 SMART tpr_5 126 159 IPR019734 GO:0005515
Lan5g1180 483 SMART tpr_5 313 346 IPR019734 GO:0005515
Lan5g1180 483 SMART dnaj_3 366 425 IPR001623 -
Lan5g1180 483 ProSiteProfiles TPR repeat profile. 80 113 IPR019734 GO:0005515
Lan5g1180 483 PRINTS DnaJ domain signature 369 387 IPR001623 -
Lan5g1180 483 PRINTS DnaJ domain signature 387 402 IPR001623 -
Lan5g1180 483 PRINTS DnaJ domain signature 405 425 IPR001623 -
Lan5g1180 483 PRINTS DnaJ domain signature 425 444 IPR001623 -
Lan5g1180 483 ProSitePatterns Nt-dnaJ domain signature. 410 429 IPR018253 -
Lan5g1180 483 ProSiteProfiles TPR repeat profile. 195 228 IPR019734 GO:0005515
Lan5g1180 483 ProSiteProfiles dnaJ domain profile. 367 433 IPR001623 -
Lan5g1180 483 PANTHER DNAJ PROTEIN P58IPK HOMOLOG 11 483 IPR044620 -
Lan5g1180 483 CDD DnaJ 367 422 IPR001623 -
Lan5g1180 483 Pfam Tetratricopeptide repeat 59 112 - -
Lan5g1180 483 ProSiteProfiles TPR repeat profile. 313 346 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1180 Lan-Chr5 25848225 25852451 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g1180 363 430 C2H2 Transcription Factor Family AT1G74250 47.222 2.71e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1180 K09523 - gmx:100781496 717.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g1180 5 25848225 25852451 Lan5g1180 5 25848225 25852451 ECH
Lan5g1180 5 25848225 25852451 Lan19g0433 19 5952453 5958433 LSH