Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1177 ATGGGTAACATCACCACCACCAACGGCGGCTCTCACCGTCGCCGAATCTCTAACGCCACCAGACGTAGCAGCCACCCTCTCCCACCGCCACCTCTAACACCGCACCCCGAAATCACCGCCCATCAATTCCTCTACCCAGGCCCATCGCAATCACAATACCCGCACCCTAATCCCAACGCTCCGATTCATTACCCTCAGCCGCAGTACCATTACCCCGGCGGTTACTATCCTCCGCCGCCGCCGCCGATGCCACATCACAATCCTCTGCACTATCCTTACCCGGTTATGGCTCCGCCTGCGCCTTATGTGGAGCATCAGAGAGCGGTTACGATAAGGAACGATGTTAATATTAAGAAGGAGACGCTTCAGATTGAGCCTGATGATGAAAATTGTGGAAGATTCCTTGTCAATTTTACGTTTGATGCTACCGTTTCTGGAAGCATCACCATATATTTCTTTGCAAAAGAAGGTGAAGGCTGTAACCTCACACCAATGAAGGAAAACCATATAGCACCAGTGACTGTGCATTTCGAGAAAGGACTTGGCCAGAAGTTTAGACAGCCAGCTGGAACTGGTATTGATTTCTCAATGTTTGAGGAGTCAGAATTATTGAAAGTGGCTGACTTGGATGTCTATCCTCTAGCAGTGAAGGCAGATGCATCATCCAGTAATCATGATGAATCAAATGAAACTCCAACTCCTGGTAACAGTAACACAAACTCTCAGATAACCCAAGCATTGTTTGTGAAGGATAAAGGAGAATTTCGGGTGAAAGTTATTAAGCAGATTTTGTCAGTAAATGGAATGAGGTATGAGCTGCAGGAGATATATGGTATCGGGAATTCAATGGAGAGTGACATGGATGAGAATGAACAAGGAAAAGAGTGTGTCATCTGCTTGTCAGAACCTCGCGACACCATTGTCCATCCTTGCCGACATATGTGCATGTGCAGCGGATGTGCAAAGGTTTTGAGGTTACAGACAAATCGATGCCCCATTTGCAGACAACCAATTGAGAGGCTTTTGGAGATAAAGGTAGGATCTGAGGAGTGA 1053 0.472 MGNITTTNGGSHRRRISNATRRSSHPLPPPPLTPHPEITAHQFLYPGPSQSQYPHPNPNAPIHYPQPQYHYPGGYYPPPPPPMPHHNPLHYPYPVMAPPAPYVEHQRAVTIRNDVNIKKETLQIEPDDENCGRFLVNFTFDATVSGSITIYFFAKEGEGCNLTPMKENHIAPVTVHFEKGLGQKFRQPAGTGIDFSMFEESELLKVADLDVYPLAVKADASSSNHDESNETPTPGNSNTNSQITQALFVKDKGEFRVKVIKQILSVNGMRYELQEIYGIGNSMESDMDENEQGKECVICLSEPRDTIVHPCRHMCMCSGCAKVLRLQTNRCPICRQPIERLLEIKVGSEE* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1177 350 ProSiteProfiles Zinc finger RING-type profile. 296 335 IPR001841 -
Lan5g1177 350 SMART ring_2 296 334 IPR001841 -
Lan5g1177 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 345 IPR013083 -
Lan5g1177 350 SUPERFAMILY RING/U-box 295 340 - -
Lan5g1177 350 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 295 335 IPR045195 -
Lan5g1177 350 MobiDBLite consensus disorder prediction 1 64 - -
Lan5g1177 350 MobiDBLite consensus disorder prediction 220 241 - -
Lan5g1177 350 Pfam Zinc finger, C3HC4 type (RING finger) 294 340 - -
Lan5g1177 350 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 349 - -
Lan5g1177 350 PANTHER MAHOGUNIN 1 349 IPR045194 GO:0061630
Lan5g1177 350 MobiDBLite consensus disorder prediction 221 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1177 Lan-Chr5 25832123 25835423 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g1177 90 315 C3H Transcription Factor Family AT3G09770 61.803 8.16e-96 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1177 - - aprc:113862864 489.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g1177 5 25832123 25835423 Lan5g1177 5 25832123 25835423 ECH