Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1176 ATGTATATTCTTCTTCCTTTCTCTCTTCATTGTGTTCCTGTTTCTTCACTCGCCTTCCATCTCCAAAATCTTCATAAGATCCTAGGAAGTTTATGCTTCTCTAGTCACATGAAGATTCCTTGTTCTTTTTGTTTCAAAAAACAAACCAACCAAGAAGACCCAGAGGAAGATAATGATGGAACCTTTCGTGTTTTCACTCATAGAGAATTAAAATCTGCTACTCGTGACTTTCATCCCTCACAAAAAGTTGGAGAAGGAGGATTTGGTTCTGTCTACAAGGGGAAGTTAAGGGATGGTACTTTGGTGGCAGTGAAAGTGCTTTCAATTGAGGTTGAATCCATGAGAGGAGAGAAAGAGTTTGTGGCAGAATTGGCTACACTAGCAAATATCAAGCACCAAAATCTGGTTATTCTAAGAGGGTGTTGTGTGGAAGGAGCTCAAAGATATTTAATCTATGATTACATGGAGAACAATAGTCTCCATCATTCTTTCCTAGGTTCAGAGCTTAACAGGATGAGATTTAGTTGGGAAACAAGGAGGAACATATCCATAGGTGTGGCTAGTGTGCTTGCTTTTCTCCATGAGGAACTGAAGCCTCATATTGTGCATAGAGATATCAAAGCCAGAAATATCCTTCTTGATAGAAATTTCACACCAAAAGTTTCTGACTTTGGTTTAGCAAGGTTACTAAGAGATGAAAAATCCTACATCAGCACTCAAGTTGCAGGGACATTAGGTTATCTTGCTCCCGAGTATGCTAGTTCCGGACAGGTGACACGAAAATCAGATGTTTATAGCTTTGGAGTACTACTCTTAGAAATTGTCAGTGGCAGAGTTGTGGTTGATGCTTTTCAAGATGTGGAAAGTTTCTTAGTAGAGAAGGCTTGGGCAGCATATGAAGCTCATGATCTTATAAGAATGGTGGATCCATTGCTGAATACGAACTTTCCGGTCGACGAAGCCAAGCAATTCTTAATGGTAGGCCTACGTTGCGTGCAAGAAACCGCAAAACTCCGGCCACAAATGTCGGAGGTGGTAGAAATGTTATTGAGTAAAGACATGGAAATGGAAAGTGTTAGTATTTCAAAACCTGGGTTTGTTAATGATCTAAGGAACATTAGAATGAAGCAAGAAATGGATTCATTAGAGGAATGTAACTCTAGTGGAGCAACATTCACAAGCTCTATGTGGAGTACAACAAATCTTGCTCGTTAA 1215 0.3975 MYILLPFSLHCVPVSSLAFHLQNLHKILGSLCFSSHMKIPCSFCFKKQTNQEDPEEDNDGTFRVFTHRELKSATRDFHPSQKVGEGGFGSVYKGKLRDGTLVAVKVLSIEVESMRGEKEFVAELATLANIKHQNLVILRGCCVEGAQRYLIYDYMENNSLHHSFLGSELNRMRFSWETRRNISIGVASVLAFLHEELKPHIVHRDIKARNILLDRNFTPKVSDFGLARLLRDEKSYISTQVAGTLGYLAPEYASSGQVTRKSDVYSFGVLLLEIVSGRVVVDAFQDVESFLVEKAWAAYEAHDLIRMVDPLLNTNFPVDEAKQFLMVGLRCVQETAKLRPQMSEVVEMLLSKDMEMESVSISKPGFVNDLRNIRMKQEMDSLEECNSSGATFTSSMWSTTNLAR* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1176 404 CDD STKc_IRAK 83 349 - -
Lan5g1176 404 ProSiteProfiles Protein kinase domain profile. 77 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan5g1176 404 Gene3D Phosphorylase Kinase; domain 1 46 154 - -
Lan5g1176 404 Pfam Protein tyrosine and serine/threonine kinase 80 349 IPR001245 GO:0004672|GO:0006468
Lan5g1176 404 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Lan5g1176 404 SUPERFAMILY Protein kinase-like (PK-like) 60 376 IPR011009 -
Lan5g1176 404 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 32 381 - -
Lan5g1176 404 ProSitePatterns Protein kinases ATP-binding region signature. 83 105 IPR017441 GO:0005524
Lan5g1176 404 PANTHER RECEPTOR-LIKE KINASE 32 381 - -
Lan5g1176 404 SMART serkin_6 77 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan5g1176 404 Gene3D Transferase(Phosphotransferase) domain 1 155 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1176 Lan-Chr5 25827803 25831068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g1176 64 369 Receptor kinase-like Gene Family AT1G56120 48.860 8.48e-90 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lan5g1176 PK_Tyr_Ser-Thr 3.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1176 - - gmx:100813945 548.125