Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1175 ATGACAAAGGACATTAAAGACATGCCACAAGGTGAATTGGATCACCACAAGGACTATTATGACCCACCACCAGCACCACTCTTTGATGCCAAAGAACTCTCCAAATGGTCTTTTTATAGAGCCCTTATTGCAGAATTCGTTGCTACACTCCTCTTCTTGTATATAACCATTTTGACCGTTATCGGCTACCACAGCCAGACTGACCCGACTCATGGGGGCGATGCTTGTGGTGGCGTTGGGATTCTTGGTATTGCTTGGGCTTTTGGTGGCACCATCTTTGTTCTTGTGTATTGTACTGCTGGAATATCAGGGGGTCACATAAACCCAGCGGTTACTTTTGGTTTGTTACTTGCAAGAAAAGTTTCATTAGTGAGAGCTCTATTATACATGGTGGCTCAGGTTTTAGGAGCCATATCTGGTGTTGGGTTAGTCAAGGCTTTCCAAAAGGGTTACTATAACAAGTACAAAGGTGGTGCTAATATTCTAGCTCATGGTTATAGCAAAGGAACTGGTTTGGGTGCTGAGATTGTTGGAACCTTTGTTCTTGTCTATACAGTCTTATCTGCTACTGACCCTAAGAGAAAAGCTAGAGATTCCCATGTTCCGGTTTTGGCACCACTTCCGATTGGATTTGCGGTGTTCTTGGTTCACCTGGCCACCATCCCTATCACCGGAACCGGCATCAACCCTGCTAGAAGCTTCGGAGCCGCCGTGTTGTACAACAACAAGAAAGCATGGGATGACCAGTGGATCTTCTGGGTTGGACCCTTCATTGGTGCTGCCATTGCTGCAATCTATCACCAATATGTGTTGAGAGCACATTCAGACAAGTCTCATGGTTCTTCCAGAAGTTCCCAACATCTATAA 867 0.4533 MTKDIKDMPQGELDHHKDYYDPPPAPLFDAKELSKWSFYRALIAEFVATLLFLYITILTVIGYHSQTDPTHGGDACGGVGILGIAWAFGGTIFVLVYCTAGISGGHINPAVTFGLLLARKVSLVRALLYMVAQVLGAISGVGLVKAFQKGYYNKYKGGANILAHGYSKGTGLGAEIVGTFVLVYTVLSATDPKRKARDSHVPVLAPLPIGFAVFLVHLATIPITGTGINPARSFGAAVLYNNKKAWDDQWIFWVGPFIGAAIAAIYHQYVLRAHSDKSHGSSRSSQHL* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1175 288 CDD MIP 40 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan5g1175 288 PANTHER AQUAPORIN PIP2-4-RELATED 1 285 - -
Lan5g1175 288 SUPERFAMILY Aquaporin-like 32 276 IPR023271 -
Lan5g1175 288 Gene3D Glycerol uptake facilitator protein. 25 287 IPR023271 -
Lan5g1175 288 Pfam Major intrinsic protein 32 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan5g1175 288 ProSitePatterns MIP family signature. 106 114 IPR022357 -
Lan5g1175 288 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 285 IPR034294 -
Lan5g1175 288 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan5g1175 288 PRINTS Major intrinsic protein family signature 88 112 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan5g1175 288 PRINTS Major intrinsic protein family signature 125 144 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan5g1175 288 PRINTS Major intrinsic protein family signature 174 192 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan5g1175 288 PRINTS Major intrinsic protein family signature 210 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan5g1175 288 PRINTS Major intrinsic protein family signature 250 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan5g1175 288 TIGRFAM MIP: MIP family channel proteins 44 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1175 Lan-Chr5 25812156 25815441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g1175 1 288 Major Intrinsic Protein MIP AT3G53420 77.431 4.30e-162 450
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1175 K09872 - rcu:8284532 467.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g1175 5 25812156 25815441 Lan4g1758 4 26323734 26327412 ECH
Lan5g1175 5 25812156 25815441 Lan5g1175 5 25812156 25815441 ECH
Lan5g1175 5 25812156 25815441 Lan7g0299 7 1926687 1928674 ECH
Lan9g0427 9 6175640 6178940 Lan5g1175 5 25812156 25815441 LSH