Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1170 ATGGACTCGAAAACACAGTATAATCCTCGCACCGTTGAAGAAGTTTTTAGGGATTTCAAAGGTCGAAGAGCTGGTCTCATCAAAGCTCTCACCACTGATGTTGAAGAGTTCTACAGTCAATGTGATCCCGAAAAGGAGAACTTGTGCTTATATGGCTTTCCTAGTGAGCAGTGGGAAGTAAATTTACCTGCCGAAGAAGTTCCGCCTGAGCTTCCTGAACCTGTCCTGGGCATTAACTTTGCTAGGGATGGCATGCAAGAAAAAGATTGGTTATCTTTAGTTGCTGTCCACAGTGATGCATGGTTACTTGCTATTGCCTTCTATTTTGGTGCCAGATTTGGGTTTGATAAGGCTGATAGGAAACGCCTGTTCAATATGATTAATGAACTGCCAACAATATTTGAAGTTGTTACTGGTGCAGCAAAGAAACAAGTTAAGGAGAAGTCATCAGTTTCAAACCACAGTGGCAGCAAATCGAAGTCCAGCTCTAAAACTCGGGCTCCGGAATCTCAGGCCAGACAGTCAAAAGCCTTACCATCAAAGGACGAGGATGATGATCTGGTTGATGAAGAAGATGAAGATGAACATGGAGAGGCCTTATGTGGTGCATGCGGTGAGAATTATGGTACTGATGAATTCTGGATTTGCTGCGACATCTGCGAGAAGTGGTTCCACGGGAAATGTGTGAAGATCACCCCGGCTAAGGCATATCATATCAAACAATACAAGTGTCCATCATGCAGTAACAAGAGAGCTCGCCCTTGA 765 0.4418 MDSKTQYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYSQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDAWLLAIAFYFGARFGFDKADRKRLFNMINELPTIFEVVTGAAKKQVKEKSSVSNHSGSKSKSSSKTRAPESQARQSKALPSKDEDDDLVDEEDEDEHGEALCGACGENYGTDEFWICCDICEKWFHGKCVKITPAKAYHIKQYKCPSCSNKRARP* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1170 254 ProSitePatterns Zinc finger PHD-type signature. 201 247 IPR019786 -
Lan5g1170 254 CDD PHD_AL_plant 200 250 IPR044104 -
Lan5g1170 254 SUPERFAMILY FYVE/PHD zinc finger 190 251 IPR011011 -
Lan5g1170 254 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Lan5g1170 254 ProSiteProfiles Zinc finger PHD-type profile. 198 250 IPR019787 -
Lan5g1170 254 MobiDBLite consensus disorder prediction 150 175 - -
Lan5g1170 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 249 IPR013083 -
Lan5g1170 254 Pfam PHD-finger 201 250 IPR019787 -
Lan5g1170 254 PANTHER CPG BINDING PROTEIN 6 254 IPR045104 GO:0006355|GO:0042393
Lan5g1170 254 SMART PHD_3 200 248 IPR001965 -
Lan5g1170 254 MobiDBLite consensus disorder prediction 145 192 - -
Lan5g1170 254 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 6 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1170 Lan-Chr5 25116279 25124179 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g1170 7 253 Alfin-like Transcription Factor Family AT3G42790 73.684 1.21e-122 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Lan5g1170 Alfin 3.4e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1170 - - gmx:100794662 451.44