Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1164 ATGAAAGTTGAGACTCTTGTTACAGAAGATGGTGGAGGACATTCCAATTTTTGGTGTACCGAGGAATTGACAGAAGAATATAAAGATAATACACAAGCAGATTGTCATATGAAAGATGATGGACAAGTTGTATGTTACAATTGTTTGCATGGTGGAACACTCTTGCGCTGCTGTGGAAAAGGATGTCGAAGGAGGTACCATTCCTCTTGTTTGGATCCTCCTCTCAAATATACTGCTGCAATGTTTTGGTACTGTATCTGGTGTGTTAAGAAAATGGTAGAGCTTGGTGTGCATTCTGTCTCTGAAGGGGTAGAATCCGTCTTGGATTCTAGAGAAGTGGTTTCAGAAGATAAAGTGGTGCAAAGGGAGTACTTTGTCAAGTATCAGGGCCTTGCTCATGCTCACAACTGCTGGATTCCAGAAACACGGATGCTTCTTGAAGCTCCAAAGCTTTTGGCAAAGTTTAAGAAGAAACCCCAGGTTATCAGGTGCACAAGAGAGTGGAGTATACCTTACCGCTTGCTGCTAAAAAGGAAATTTATATTGCCAAAGCGAAATGATGAACATTTAAATGGGGAGGATGACTGCCGTTATCAATGGCTTGTAAAATGGACCGGTCTTGGTTATGATAACGTTTCATGGGAGTTAGATAATGCTTCGTTTATGACATCGTCTGAAGGCATGAAACTCACACAAGAGTACGAATGTCGTCGAATGATAGCAAACAGACTGTCAAAACCTTTTGAAACGAATAAGGGGAGAGAAGCTTCCTTTGCTGAATTACCAGTTTTGCCATGTGGAGATTCACCAGGGTTTTATAACCAGTATTTAAGTTATGTGAACAAGCTTCACATGTGTTGGAACAAACGTCAGAGTGCTCTTATTGTAGACGATCATGTTGACCAGGAGCGGGCTATGAAGGTGATTCTGTTCATATTATCTTTGCATTGTAATGTGGAGAGGCCTTTTCTCATCATCTCAGGTTCTACTTCCCTCTCTATGTGGGAAACAGAGTTCTTACATCTGGCACCATCTGTCAATCTTGTAGTTTACAAAGGAGACAAAAATGCAAAAAGTAGCATCAGGGAATTAGAGTTTTATAATGATGATGGTAGCATCTTATTCCAAATACTATTAGTATCTTATGATGTTATCATTGAGGACTTAGTTGCACTAAGTTGCATTCAATGGGAAGTGATAATAATTGATGAATGCCAGAGACCCAAAATTTGTAAACACTTGGACAATATCTCGATTCTGGCAGCTGAGATGAAGCTCGTTCTTGTTAGTGGACTAATCAAGGATGATCGAGCTGATTTTATCAAATTACTTTCATTCCTTAAGTCTGGACATCATGGATTAGATGTTCCTCCAGTGGAGACTTTCTTCTCCGCTAGCATTTCCGATTTGAAGAGACAATTGGAAAAATATGTTGCATTTAGGTCCACTAGGTTTGTAGAGTATTGGGTTCCTGCCCCGCTTTCCAGTTTGCAGCTCGAACAATATTGTTCAATGCTGCTTTCACACTCAACATTGTTATGCTCAGGCCAAAAGTCTGACAATGTTGCTGCTCTCCATGATCTTATTATCTCAACAAGGAAGTGCTGTGGCCACCCTTATCTTCTGGACCAGTCACTGCATAGTTTTGTCACTAGAGGCCTTCCTGTTGAAGAGCACTTAAATATTGGAATTAAAGCAAGTGGAAAGTTGCAGCTTCTTGAAAAAATCCTTTTGGAAGCAAGAAGTCGAGGACTAAGAGTGATAATACTATTTCAGTCAACAGCTAATGGTTCTGCATCAATTGGAGATATTTTAGACGATGTTCTCTGTCAGAGATTTGGTAAAGATTGCTATGTACGGTATGATAGACTGTATAGACCATCAATGAAGCAAGCTGCCCTAGACACATTTAACGACAGGGAAAGTGGAAAATTTGTCTTCTTGATTGAAAACCGTGCTTGTCTACCTAGTGTTAAGCTTTCCTCAGTGGATACTGTTATATTATTTGACAGTGATTGGGATCTACATAATGACCTCAGAGCCTTACACAAGATGTCTATCAGCTTCCAGCGCACGGAGATAACTGTTTTCAGATTGTACTCACCTTTCACTGTTGAAGAGAGGGCTTTAATACTTGCAAAAGAGGGTATAGCTCTTGAAAGCGATATGCAGTTGATTACCCAGAGTACTTTTCTCAATCTGCTAAAATGGGGTGCCTCATATCTGTTCAATAAGCTTGATGACTTGCATTGTAGTGGCTCCTCAGTGTCTGCTGCAGACATCTCCACTGATGAGTCACTTCTAAATGATGTAACCGGTGAATTATTATCTCGACTGGTCTATAGCAGTGGTGACACTGATTGTCATGAATGGTCATTCATATTCAGAGCACAACTAAATGGAGGGGAATTTGCCAGGAACATTTTATTGGCAGGAGAAAGAGTTATGAAGAAATCGGATAATGGACCAAATATATTTTCCTGGAGTGATCTCCTTAATGGAAGGCAACCTCGGTGGATTTTTTTGTCTGTTTCATCTCAAAGGACCAGGAAAACAGTCAAATATTTTGATCACATTGAAAAAGAATCTGAGTATTTAAGTGATCCCATTATGAGCGAGAAGAAAAAAGTGTCGAAGGCTAATGTCAATCCCAATAGGAGGAAACTATCGAAGGATAATGTTCCTGAGAGGAGGGAAGTGATCAAGGGTAGTGTTGATCCCAATAGGAGGAAAGCGTCCAAGGATAGTGTTGATCCCAAAAAGAGGAAATTCTCTTCCAAGTATAACATTGATTTGAAGAGAAGGAAAGTTTCAAAGGATATTGTTGACTCCAAATATCTGAAAACAAGGCTTGAGAAAAAGAAGAAACCAAGTGCTGTTAGAAAGGCAAGAAAAATGAATGGTACTGCTGAACAAAATAAACTGCATGACATACCAGAGAGTGCTGAGTTATTGCCAAAACCAGATATATCAGTTCTGTGTGATGTTCTACATCTTCCGAAAAACGTCAAGGCCATTGCCATGAGGATTCTTGAGCACATATTTAAACATTACAACATCAGTTGCGAGGATGGTTCTACCACACAGGCATTTAAAATATCAGTGTGTTGGCTAGCAGCTTCTTTCTTGAAACACAAGATTGACAGGAAATATTCTCTTGTACTCGCAAAACTGTATTTGAATTTCATTTGCAAGGAAGAGGAAATCATTGAAGTTTACTCTGAACTGCGGAAGTTTAAGCAAGAAATTTCAAGTTGTTTACAAAATGGACTTCATGTTGAGAATTGCAACATAAATAGTGCTTCAGACTCTGAGATACCTCAGCTGAAAGATTTGTCAGGTGAGAAGCAGAAGGGTTTTCAGGGTCCTTGTCTTTCAAATATTTTAGAATCTGCCACAAACAAACATCTTCAGACAAAATCTCCCACAACAGTGCTGTCTTCACATGACATGGCTTATACAGAAAAATTTCATAGCAGCCCTTCTATGGCTCATGAAAATTTCCTATCTCAAAATACATCTTGTAGTCTGCCTCTGGAAACTGATGCCATGGAATTGGAATCTGGTGAAGAAGATGACAGAATGAATGCTATGTCCTCGGTAGCTGCAGAAGTTTCGTACCCTGAAAACCAGAATAAAATCCCGAATTCAAGCAATAATCCTCATAATGTCAGTCATGTTACATGTTCTTTTGAAAGACAGATTTCTATTAAAAGTACAGAGATTGCTGGGTTTGATGGCAAAGATTCTGAAGATCTTCATATTTTAGTGAACGAAGTGGTTGCTGGTGACAATTCTATAAATATGGCTACGCATACTGCACAACTTGACAGCGTTGAGACAGATGCTTTAACTTGTGATATCACTGAGCAACAGAATAAAGTGCCAAATTCAAGTAATAATCCTCATAATGTCATCCCTGTTACAAGTTCTTTGGGAAGACAGAGTTCTATTAGAAGTACAGAGATTGCTGTGTCTGACTTCAACGTTTCCGAAGGTCCTCATATTTTTGTGAACGAATTGGTTGCTGGTGACAATTCTATGAATATTCATCCTGCACAACTTGACAGTGTTGAGACAGATGCTTTAACTTGCGATAGTACTGTTGTTCCTGATTTCAGACAAAGTGACAATGTATTGAGTCCTGTATGTGGTCAGTCAACTACCTCGGAGTTTGCTGAAACCACCTTACCATTTATGCAACCGTCATATGCAAACTCGTCGTCGTCGCCATTGCCTCAGATGACTATGCCTTCTATTCCATCTTTTTTGGAGGACAATTCAACAAGTACCGTCATGCGTCTAGAGGCTGAAGTACTATTGCAAGCACTGAATGACTCGGCGGAAACAGTTAACCCTTCCTTTATTCCACCTGTCACACAGCAACCCTTCCCCATTGAGCCCTTGAATGAAAATACAAGACATGTTCCTCACAGTATTTCCAATGCTCAGTATGCGACATCTGAAACACCCGACACCACATACCGAGATCCAATGGTAATTGAAATGGAGAGAATAAAAAAGGTGAAAGAAGAAGTCTCCAAGATTCATGAGAAAAAAACATCGCAGCTCCAATCTGATTACCAAAAGGAGGTTGAAATGTTGCGTGAAAAGTACACTATGTTGATTCAGGAGGCTGATACTGCAGTAGCACTAAAGATTGAGGAACTTGAGATGCAATGTAAAATAGCTTGTATGAATAAGGCATTGGCCGAGGCTTGGGTTGATGCAGAATACATAGATCAAGTGCCAACACCTAGCTCCTCAAGTTCTCATGTTCCGAAACACCATACATCTCATATGCCTGCTGAAGGATTTGAACAATGTATGGCAGGTCCACCACAATGCACCCAACCTTATCAACTCCAATGA 4872 0.3992 MKVETLVTEDGGGHSNFWCTEELTEEYKDNTQADCHMKDDGQVVCYNCLHGGTLLRCCGKGCRRRYHSSCLDPPLKYTAAMFWYCIWCVKKMVELGVHSVSEGVESVLDSREVVSEDKVVQREYFVKYQGLAHAHNCWIPETRMLLEAPKLLAKFKKKPQVIRCTREWSIPYRLLLKRKFILPKRNDEHLNGEDDCRYQWLVKWTGLGYDNVSWELDNASFMTSSEGMKLTQEYECRRMIANRLSKPFETNKGREASFAELPVLPCGDSPGFYNQYLSYVNKLHMCWNKRQSALIVDDHVDQERAMKVILFILSLHCNVERPFLIISGSTSLSMWETEFLHLAPSVNLVVYKGDKNAKSSIRELEFYNDDGSILFQILLVSYDVIIEDLVALSCIQWEVIIIDECQRPKICKHLDNISILAAEMKLVLVSGLIKDDRADFIKLLSFLKSGHHGLDVPPVETFFSASISDLKRQLEKYVAFRSTRFVEYWVPAPLSSLQLEQYCSMLLSHSTLLCSGQKSDNVAALHDLIISTRKCCGHPYLLDQSLHSFVTRGLPVEEHLNIGIKASGKLQLLEKILLEARSRGLRVIILFQSTANGSASIGDILDDVLCQRFGKDCYVRYDRLYRPSMKQAALDTFNDRESGKFVFLIENRACLPSVKLSSVDTVILFDSDWDLHNDLRALHKMSISFQRTEITVFRLYSPFTVEERALILAKEGIALESDMQLITQSTFLNLLKWGASYLFNKLDDLHCSGSSVSAADISTDESLLNDVTGELLSRLVYSSGDTDCHEWSFIFRAQLNGGEFARNILLAGERVMKKSDNGPNIFSWSDLLNGRQPRWIFLSVSSQRTRKTVKYFDHIEKESEYLSDPIMSEKKKVSKANVNPNRRKLSKDNVPERREVIKGSVDPNRRKASKDSVDPKKRKFSSKYNIDLKRRKVSKDIVDSKYLKTRLEKKKKPSAVRKARKMNGTAEQNKLHDIPESAELLPKPDISVLCDVLHLPKNVKAIAMRILEHIFKHYNISCEDGSTTQAFKISVCWLAASFLKHKIDRKYSLVLAKLYLNFICKEEEIIEVYSELRKFKQEISSCLQNGLHVENCNINSASDSEIPQLKDLSGEKQKGFQGPCLSNILESATNKHLQTKSPTTVLSSHDMAYTEKFHSSPSMAHENFLSQNTSCSLPLETDAMELESGEEDDRMNAMSSVAAEVSYPENQNKIPNSSNNPHNVSHVTCSFERQISIKSTEIAGFDGKDSEDLHILVNEVVAGDNSINMATHTAQLDSVETDALTCDITEQQNKVPNSSNNPHNVIPVTSSLGRQSSIRSTEIAVSDFNVSEGPHIFVNELVAGDNSMNIHPAQLDSVETDALTCDSTVVPDFRQSDNVLSPVCGQSTTSEFAETTLPFMQPSYANSSSSPLPQMTMPSIPSFLEDNSTSTVMRLEAEVLLQALNDSAETVNPSFIPPVTQQPFPIEPLNENTRHVPHSISNAQYATSETPDTTYRDPMVIEMERIKKVKEEVSKIHEKKTSQLQSDYQKEVEMLREKYTMLIQEADTAVALKIEELEMQCKIACMNKALAEAWVDAEYIDQVPTPSSSSSHVPKHHTSHMPAEGFEQCMAGPPQCTQPYQLQ* 1624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1164 1623 Coils Coil 1525 1545 - -
Lan5g1164 1623 SMART PHD_3 44 89 IPR001965 -
Lan5g1164 1623 ProSiteProfiles Chromo and chromo shadow domain profile. 102 167 IPR000953 -
Lan5g1164 1623 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 572 738 IPR001650 -
Lan5g1164 1623 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 97 IPR013083 -
Lan5g1164 1623 SMART chromo_7 167 239 IPR000953 -
Lan5g1164 1623 SMART chromo_7 101 160 IPR000953 -
Lan5g1164 1623 MobiDBLite consensus disorder prediction 885 922 - -
Lan5g1164 1623 PANTHER HELICASE PROTEIN MOM1-LIKE ISOFORM X1 34 1600 - -
Lan5g1164 1623 SUPERFAMILY Chromo domain-like 61 160 IPR016197 -
Lan5g1164 1623 Gene3D - 103 160 - -
Lan5g1164 1623 ProSitePatterns Zinc finger PHD-type signature. 45 88 IPR019786 -
Lan5g1164 1623 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 485 750 IPR027417 -
Lan5g1164 1623 ProSiteProfiles Zinc finger PHD-type profile. 42 91 IPR019787 -
Lan5g1164 1623 Pfam SNF2-related domain 273 452 IPR000330 GO:0005524|GO:0140658
Lan5g1164 1623 Gene3D - 1495 1575 - -
Lan5g1164 1623 MobiDBLite consensus disorder prediction 953 972 - -
Lan5g1164 1623 SUPERFAMILY FYVE/PHD zinc finger 39 92 IPR011011 -
Lan5g1164 1623 Gene3D - 277 486 IPR038718 -
Lan5g1164 1623 MobiDBLite consensus disorder prediction 876 922 - -
Lan5g1164 1623 Gene3D - 181 229 - -
Lan5g1164 1623 Gene3D - 487 720 IPR027417 -
Lan5g1164 1623 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 34 1600 - -
Lan5g1164 1623 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 309 453 IPR027417 -
Lan5g1164 1623 CDD SF2_C_SNF 567 699 - -
Lan5g1164 1623 Pfam Chromo (CHRromatin Organisation MOdifier) domain 104 158 IPR023780 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1164 Lan-Chr5 24910775 24925674 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lan5g1164 SNF2_N 2.5e-10 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1164 - K11643 gmx:100813574 1403.65