Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1160 ATGAAGTGTTTTATATTCCAGTATGGAGAGAAGAAAGGTGAACCTAAAGGCTTTCAACCTATATCGGGTCGGTCAGACAATTCCACATATGTTGAGGCCGACGTTAGAGGATCTGGTCCTGAGTTGAATTCTCAGGAAGTCTCGGACAATGAATCCCTCAGGAGAAGTCCACCTAGTTTGTCACAAAGACCTAGCAACCTTAGAGTGTTTACTGTATCTGAACTGAAATCAGCCACGAAGAATTTCAGTCGATCTGTCATGATTGGAGAGGGTGGGTTCGGGTGTGTCTACCAAGCTTTGGTCAAAAGCTTAGAAGACCCATCACAAAAAATTGAAGTTGCAATTAAACAACTTAGTAAAAGAGGAATGCAGGGGCATAGGGAATGGGTGACAGAAGTGAATGTTTTGGGCATTGTTGAGCATCACAATCTTGTGAAACTAGTGGGATACTGTGCTGAGGATGATGAAAGAGGAATCCAGCGGCTTCTGATCTATGAATACATGCCAAACAGAAGTGTAGAACACCATTTATCACACCGATCCGAAACTCCTCTCTCATGGGATCGGAGACTAAAAATAGCCCAAGATGCAGCTCGCGGGTTAACATACCTGCATGAGGAAATGGATTTTCAGATAATTTTCAGAGATTTCAAATCTTCAAATATCCTTCTGGATGAACAATGGAACGCGAAATTATCAGACTTCGGTTTAGCAAGATTGGGACCATCTGATGGACTAACTCACGTCTCAACAGCGGTTGTAGGAACACTAGGATATGCAGCTCCTGAATATCTTCAAACCGGACGTCTCACATCAAAGAACGATGTATGGAGCTATGGTGTCTTCCTTTTTGAACTCATCACTGGCAGGCGCCCTTTAGATCGAAATCGGCCCAGGGGTGAACAGAAGCTGTTGGAATGGATAAAGCCATACCTAGCTGATGCAAAGAAATTTGAACTCATATTGGATCCAAGACTTGACACGAAACAAGTTGTAAAGTCAGCCCAGAGACTTGCTGCAATAGCTAACTGGTGTCTGGTTAAACACCCTAAGAGTCGGCCGAAGATGAGTGAGATATTGGAAATGGTGAATGGACTAGTAGAATCTTCATCTGGTGCAAGTCCACAGTTACCCTTGAAGAGTTTGGCAAAATTGGAAGCTTCACAAGACACTCAAATAAAGAACAAGAAAAGGACCATGGATCAGAAGCCCGGGGAAAGTAATTGGTTTGTTCGGATATGGAGACCAAAACTTTTAAGATCCGCATAG 1269 0.4318 MKCFIFQYGEKKGEPKGFQPISGRSDNSTYVEADVRGSGPELNSQEVSDNESLRRSPPSLSQRPSNLRVFTVSELKSATKNFSRSVMIGEGGFGCVYQALVKSLEDPSQKIEVAIKQLSKRGMQGHREWVTEVNVLGIVEHHNLVKLVGYCAEDDERGIQRLLIYEYMPNRSVEHHLSHRSETPLSWDRRLKIAQDAARGLTYLHEEMDFQIIFRDFKSSNILLDEQWNAKLSDFGLARLGPSDGLTHVSTAVVGTLGYAAPEYLQTGRLTSKNDVWSYGVFLFELITGRRPLDRNRPRGEQKLLEWIKPYLADAKKFELILDPRLDTKQVVKSAQRLAAIANWCLVKHPKSRPKMSEILEMVNGLVESSSGASPQLPLKSLAKLEASQDTQIKNKKRTMDQKPGESNWFVRIWRPKLLRSA* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1160 422 MobiDBLite consensus disorder prediction 12 62 - -
Lan5g1160 422 CDD STKc_IRAK 88 366 - -
Lan5g1160 422 Pfam Protein tyrosine and serine/threonine kinase 87 361 IPR001245 GO:0004672|GO:0006468
Lan5g1160 422 Gene3D Phosphorylase Kinase; domain 1 62 167 - -
Lan5g1160 422 Gene3D Transferase(Phosphotransferase) domain 1 168 377 - -
Lan5g1160 422 ProSiteProfiles Protein kinase domain profile. 82 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan5g1160 422 PANTHER KINASE 1B 15 416 - -
Lan5g1160 422 MobiDBLite consensus disorder prediction 41 62 - -
Lan5g1160 422 ProSitePatterns Protein kinases ATP-binding region signature. 88 116 IPR017441 GO:0005524
Lan5g1160 422 SUPERFAMILY Protein kinase-like (PK-like) 57 363 IPR011009 -
Lan5g1160 422 PANTHER OS01G0588500 PROTEIN-RELATED 15 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1160 Lan-Chr5 24884791 24888727 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g1160 1 373 Glycoside Hydrolase AT3G07070 40.209 2.10e-93 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lan5g1160 PK_Tyr_Ser-Thr 1.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1160 - - gsj:114400704 717.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g1160 5 24884791 24888727 Lan5g1160 5 24884791 24888727 ECH