Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1147 ATGGCGATAAGAAACATAGCACTAGGAAGACCCGAAGAAGCAACACACCCAGAAACATTGAAAGCTGGTTTAGCTGAGTTTATATCAACATTCATATTCGTATTTGCTGGTTCAGGTTCAAGTATTGCATACAATAAGCTTACAAATGATGGTCCTGCTACACCTTCTGGACTCATAGCTGCATCAATTGCTCATGCTTTTGCTCTCTTTGTTGCTGTATCCGTTGGTGCTAACATTTCTGGTGGCCATGTCAACCCTGCTGTTACTTTTGGTGCGTTTGTTGGTGGTAACATTACGTTCCTACGTGGTGTTGTGTATGTTATTGCTCAGCTTCTTGGATCCATTGTTGCATCTTTGCTCCTTACCTTTGTCACTGGACTCGGTGTTCCAGCATTCGGTCTTTCAGCAGGAGTTGGTGTAGGAAACGCTTTAGTCCTCGAAATAGTGATTACTTTTGGTTTGGTGTACACGGTTTACGCTACAGCCGTTGACCCAAAGAAGGGTAATTTAGGAATTATAGCTCCAATCGCTATTGGTTTCATAGTTGGTGCTAACATTTTAGTTGGTGGAGCTTTCACTGGAGCATCAATGAACCCAGCAGTGGCATTTGGGCCTGCTGTTGTGAGTTGGGCCTGGACCAACCATTGGATCTATTGGGTTGGGCCTCTTATTGGTGGTGGGCTTGCTGGGTTTTTATATGAGGTTCTTTTTATTAACCATAGTCATGAACAAATCCCAACTACTAATTACTAG 753 0.4329 MAIRNIALGRPEEATHPETLKAGLAEFISTFIFVFAGSGSSIAYNKLTNDGPATPSGLIAASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITFLRGVVYVIAQLLGSIVASLLLTFVTGLGVPAFGLSAGVGVGNALVLEIVITFGLVYTVYATAVDPKKGNLGIIAPIAIGFIVGANILVGGAFTGASMNPAVAFGPAVVSWAWTNHWIYWVGPLIGGGLAGFLYEVLFINHSHEQIPTTNY* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1147 250 Gene3D Glycerol uptake facilitator protein. 4 249 IPR023271 -
Lan5g1147 250 PANTHER AQUAPORIN-8 1 250 IPR034294 -
Lan5g1147 250 CDD MIP 21 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan5g1147 250 Pfam Major intrinsic protein 14 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan5g1147 250 PANTHER AQUAPORIN TIP1-1 1 250 - -
Lan5g1147 250 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan5g1147 250 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan5g1147 250 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan5g1147 250 PRINTS Major intrinsic protein family signature 146 164 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan5g1147 250 PRINTS Major intrinsic protein family signature 179 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan5g1147 250 PRINTS Major intrinsic protein family signature 216 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan5g1147 250 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Lan5g1147 250 SUPERFAMILY Aquaporin-like 13 244 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1147 Lan-Chr5 24774616 24776201 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g1147 1 250 Major Intrinsic Protein MIP AT2G36830 78.486 2.46e-140 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1147 K09873 - gmx:100527509 447.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g1147 5 24774616 24776201 Lan5g1147 5 24774616 24776201 ECH
Lan9g0409 9 5926662 5929209 Lan5g1147 5 24774616 24776201 LSH
Lan5g1147 5 24774616 24776201 Lan19g0421 19 5604213 5605985 LSH