Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1146 ATGCATGTCCAAGAGGAACAACAACATGATCTCGATCACATGCAAATGATCAAGTTCAAGGGCAAGCGTACGAAGCGTCAAAGACTGCCATCCCCGATTAGGTTAACCATGTCTTCAACATCTTGGACCAACAATTCGGAAGAAGAGGAAGACTTGGCGAATTGTTTGATTCTCTTGGCTCAGGGTCGACATAATCATCAAACACAAAAAGTCTCTGAGCCATATCATACGACAACACCTGATCATAACAACAAAAACGTTAGCAAGAAGATAGGGTTATATGTTTACGAGTGCAAGACTTGTAACCGATGCTTCCCTTCATTCCAAGCCCTTGGTGGCCATAGTGTGAGCCACAAGAAACCTAAGGCAAATATTGCACAAGATCAAAAGCAAGGAGTAGTTACTAGTTTTGTGAATGGTGGTGATGATGATGATAATTATGACCCTACAACCCTAACCTTGCAAATACCAAATAATAGGACTAGTATTACAAAATCTAATAAAGTTCATGAGTGTTCCATTTGTGGGGCTGAATACACATCTGGGCAAGCCTTAGGGGGTCATATGAGAAGGCATAGAACTATTTTGAACACTACTTCTTCTACAACAACAACTAATTATTCTATGAGTGGTGCAAATAATATTGGTGTTGGTGATAGCCCTAATGAATCTATAGAGGTCAAAAGACCTAGACATGTTTTGAAGTTGGACTTGAATCTTCCTGCACCTGAGGATGATCAAAGAGAACCCAAGTTGCCATTTAAGCCCAAAGAAAAAGTTATTGTTTTCAATGCAACTTCTTTGGTGAATTGTCATTACTAA 822 0.3954 MHVQEEQQHDLDHMQMIKFKGKRTKRQRLPSPIRLTMSSTSWTNNSEEEEDLANCLILLAQGRHNHQTQKVSEPYHTTTPDHNNKNVSKKIGLYVYECKTCNRCFPSFQALGGHSVSHKKPKANIAQDQKQGVVTSFVNGGDDDDNYDPTTLTLQIPNNRTSITKSNKVHECSICGAEYTSGQALGGHMRRHRTILNTTSSTTTTNYSMSGANNIGVGDSPNESIEVKRPRHVLKLDLNLPAPEDDQREPKLPFKPKEKVIVFNATSLVNCHY* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1146 273 SUPERFAMILY beta-beta-alpha zinc fingers 95 192 IPR036236 -
Lan5g1146 273 ProSitePatterns Zinc finger C2H2 type domain signature. 172 192 IPR013087 -
Lan5g1146 273 Gene3D Classic Zinc Finger 93 192 - -
Lan5g1146 273 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Lan5g1146 273 PANTHER GATA ZINC FINGER DOMAIN-CONTAINING PROTEIN 15-LIKE 20 273 - -
Lan5g1146 273 PANTHER ZINC FINGER PROTEIN ZAT5 20 273 - -
Lan5g1146 273 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 123 IPR013087 -
Lan5g1146 273 ProSiteProfiles Zinc finger C2H2 type domain profile. 170 192 IPR013087 -
Lan5g1146 273 Pfam C2H2-type zinc finger 169 194 - -
Lan5g1146 273 Pfam C2H2-type zinc finger 95 121 - -
Lan5g1146 273 SMART c2h2final6 96 118 IPR013087 -
Lan5g1146 273 SMART c2h2final6 170 192 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1146 Lan-Chr5 24766127 24767235 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g1146 12 273 C2H2 Transcription Factor Family AT2G28200 39.344 1.30e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan5g1146 zf-C2H2_6 6.7e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1146 - - lang:109356517 369.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g1146 5 24766127 24767235 Lan4g1180 4 18895441 18897011 ECH
Lan5g1146 5 24766127 24767235 Lan5g1146 5 24766127 24767235 ECH
Lan5g1146 5 24766127 24767235 Lan7g0326 7 2198645 2200458 ECH
Lan9g0408 9 5914407 5915612 Lan5g1146 5 24766127 24767235 LSH
Lan5g1146 5 24766127 24767235 Lan19g0420 19 5542257 5543367 LSH