Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1135 ATGGTTCTCAAGACTGAACTTTGCCGATTCAGTGGTGCCAAGATCTACCCAGGGAGAGGCATCAGGTTTATTCGTGGTGACTCACAGGTCTTCCTGTTTGTGAACTCAAAATGCAAGAGGTACTTCCACAACCGTTTGAAGCCATCGAAGCTCACATGGACTGCTATGTTTAGGAAGCAACACAAGAAGGATGCTGCTCAAGAAGCTGTGAAGAAGAAGCGCCGTGCTACTAAGAAGCCATACTCTAGATCCATTGTTGGTGCTACCTTAGAAGTTATTCAGAAAAGAAGAACTGAGAAGCCAGAAGTTCGTGATGCCGCTAGGGAAGCTGCTCTTCGTGAAATTAAAGAGAGGATCAAGAAGACCAAGGATGAGAAGAAGGCTAAAAAGGCAGAAGTAACTGCCAAGTCTCAAAAGTCAGGCAAGAGTAATGTTTCAAAGGGTGCAGCACCCAAAGGACCAAAGCTTGGTGGCGGTGGCGGAAAACGCTGA 492 0.4654 MVLKTELCRFSGAKIYPGRGIRFIRGDSQVFLFVNSKCKRYFHNRLKPSKLTWTAMFRKQHKKDAAQEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVTAKSQKSGKSNVSKGAAPKGPKLGGGGGKR* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1135 163 MobiDBLite consensus disorder prediction 117 163 - -
Lan5g1135 163 MobiDBLite consensus disorder prediction 117 136 - -
Lan5g1135 163 Gene3D - 69 139 - -
Lan5g1135 163 Coils Coil 112 136 - -
Lan5g1135 163 ProSitePatterns Ribosomal protein L24e signature. 10 27 IPR023442 -
Lan5g1135 163 MobiDBLite consensus disorder prediction 64 83 - -
Lan5g1135 163 PANTHER 60S RIBOSOMAL PROTEIN L24 3 163 IPR000988 -
Lan5g1135 163 CDD Ribosomal_L24e_L24 3 56 IPR000988 -
Lan5g1135 163 SMART 4TRASH 8 46 IPR011017 -
Lan5g1135 163 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 58 - -
Lan5g1135 163 Pfam Ribosomal protein L24e 4 67 IPR000988 -
Lan5g1135 163 Gene3D Ribosomal protein L24e 3 64 IPR038630 -
Lan5g1135 163 PANTHER 60S RIBOSOMAL PROTEIN L24 3 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1135 Lan-Chr5 24688698 24690637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g1135 1 156 Cytoplasmic Ribosomal Protein Gene Family AT2G36620 84.713 7.57e-86 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1135 K02896 - dcr:108220380 240.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0396 9 5804490 5806361 Lan5g1135 5 24688698 24690637 LSH