Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1129 ATGGACCCTCGTAGATCATTGAGGGGTATCGAACCTGGCGCCAAGAAACCCCGATTGATCAACGACCTAGACCGCGGTTCGGTTCTCGATCCACGGCGGTTACCTCAGCGAGCTTCGGGGCACGGTGGTGACGATGGTGGTGGGTACCACCCGCAGCCACCACCGCACCAAGAGCTTGTGGTTCAGTATAAGACTGCGCTTGCTGAACTCACTTTCAATTCGAAGCCTATTATTACGAATTTGACTATAATTGCTGGAGAGAATCTCGCTGCTGCGAAAGCAGTTGCTGGCATTGTTTGTTCTAATATTCTTGAGGTTCCAAGTGATCAAAAGCTGCCATCCCTTTATCTCTTAGACAGTATTGTTAAGAATATCGGGCGGGATTATATAAAACACTTTGCCACCAGACTACCTGAGGTATTCTGCGAGGCATACAGACAAGTTGATCCTCCAGTACATTCAAATATGAGACATCTTTTTGGAACTTGGAAAGGAGTCTTTCCTACTCAGACTCTTCAGATGATTGAGAAGGAACTTGGCTTTACTTCTGCTGCCAATGGTTCAGCGTCTGCTTCAGTCAGGAGTGACTCACAGTCACAACGCCCACCTAATAGCATCCATGTGAATCCCAAGTATTTAGAAAGGCATCAGCAGTCCATCAAGACTAAAGGAGGAGTAAATGATATGAATGGAGCTATTTTAAAATCAAAAGGGGAGCCAGAGAGAGTTTTGGGTTCTGGACGACCACCGCTTGATCCTAGGGTTACCATGCAAAATAATCAGCGCACTAATAGAGATGCATTTAATGATTCTGTTCCTGAAAAGAGCATTGGTGAGTCCTTTGGTGGTAGGATCACTGAGTTAGGATACGACAAACCTTGGTACAAAGCAGGTGGTGGTTTTGCAGAGACCAGATCAGGCCAAGGAAATGGTTTCAGTGTCAAGCCTGGCTTTTCGAATCATGAAGCACTGAAGTCGGTCAAATTGGATGCACATCGTCAGCCAGCACTGAACATAGCTAACAAAAGGAGCAGTATGATGTCAAGTAACTGGAAAAATTCTGAGGAAGAGGAGTTCACGTGGGATGAGATGAACTCTGGGTTGACTGGTCATGGTGCCCTCAATGTCTCTGACAACTTGAGCACAGACACATGGACTTCAGATGATGAGAATTTGGTAAGCCTTCCAAAGTTAAGGGAAGGTGAAGATCACCTCCAAATTGCACAAATATCCAATTTTAAGAAACAGCGACCTGTATTTGCGGGCCATCAATCATTGTCATGGAAAATGCAGGATCAGCACTCAATTGATAAGTTGAAACTGAAGCCAGGTCACTCAAAGGAACTTTTGTCCACTCTTGGTGGGTTTCAAACCAATACAAATTCTTTGTCTATTGGGATGGGGAATCGGCCTTTCATGCCAAATGCAACAATAGGAATGGCCGAAGTTATGAGACAGCAGCAATTTGACTCTGGGGGAGCCGAATCCCCTTCTGGGCAGTCACCTTTACGAGAGCAGTCTCCATCACCACCACGAATTGTGCGCAACCCTCATCCAGTGCGAAGTTTGGCTGAGCAAGATCGTTCCCATTCTCTTAAAACATCTCAGTATCTGAAAGCTCTGCCAAGTCAACATATTAAAGATCCTTTGCCTGCCCTCCCTCCCAATGTCCAGGTTGATCACTTGCGAAAATCACAGGAAAGGGACTTGCAGGATCCATTATCTTCGGCAACTTCTTTTCAGCCAAGGCTTCAGCAGCAGAAGCTGGGTCCTTCTCAGACTGATGTTACTGTTAAAACTAAGAAGCCACCCCAGTCTAAAGTTACTCTAGCCAGAGAAACTTCAGAACAGTTAACCACCAGTAGTTTGTCAGCTGCGGCTGTGAAAAGTGGAACCCTCTCCAACAAATCAACTACAAGTAGCGTTCATACTACAAGTAGTCTGGATAAAAGGAATCTTAAACCTAAATTTGGGGTTAGGCCTACTCAGTCGAGTGGGCCTTCCCCTACCACATTAATTTCTTCGGTGTCTGTAGTTGCATTACCATCTTCATTAGGCCCTTCAAACAGTGATTCACCTACGCTGCCAAAGTTACCTCAACGAAAGGCTGGACAGCCACAGAGGGTGTCTACTCAATTACCAGCCTCCTCTAATGTGAGCAATGCCTCAAATACGACTTCAAATGCCAGCACTAGTAATACGTCAAATCCAATTGCCAACCTTTTGAGCTCATTAGTTGCAAAAGGTTTGATATCTTCAGAAACAGAGTCACCGACTAAGGTACCAACTGAGATGCCGAGTCGATTGGAAGACCAAACAGAAAGCGTTGCTGCCAGTAGCTCTTTGCCAGTTGTTCCAGTTTCTGTTTCTGCAGCTGTCCCAGTATCATCTTCCAGAGATGAGGTAGATGATACTACAATACCCACACTTGCCTTATCTAAATCAACCAGCACGGAATTTATAAATCTCATTGGCTTTGATTTTAAGCCCGACATAATCCGAGAAATGCATCCACATGTAATTAGTGCTTTGCTGGATGATCTCCCACATCATTGCACAGTTTGTGGTATTAGGCTTAAACTGCAAGAACAGTTCGATAGACACTTAGAGTGGCATGCTGCTAGAGAAAGAGAACAAAGTGGTCTAATTATGGCATCAAGAAAATGGTATGCAAAATCAAACGATTGGATTGCTGGCAAGGCTGAGTATCCATCTGAGTGTGAGCTAACTGATTCTGTAGATGTATATGACAATGAAACTGAGGAGAATCAATTGGATACTATGGTTCTAGCAGATGAAAACCAGTGCTTGTGTGTACTGTGTGGCGAGGTATTTGAAGATGTGTACTGCCATGAAAGGGATGCGTGGATGTTCAAAGGGGCTGTTTACTTGAACAACACAGATGGCGATGGTGATAGTGAGATTGAAAATAGAAACTTGGGTCCCATCATTCACGCTAGATGCTTATCAGAGAACCCAATATCTAGTGTCACTTAG 2997 0.4464 MDPRRSLRGIEPGAKKPRLINDLDRGSVLDPRRLPQRASGHGGDDGGGYHPQPPPHQELVVQYKTALAELTFNSKPIITNLTIIAGENLAAAKAVAGIVCSNILEVPSDQKLPSLYLLDSIVKNIGRDYIKHFATRLPEVFCEAYRQVDPPVHSNMRHLFGTWKGVFPTQTLQMIEKELGFTSAANGSASASVRSDSQSQRPPNSIHVNPKYLERHQQSIKTKGGVNDMNGAILKSKGEPERVLGSGRPPLDPRVTMQNNQRTNRDAFNDSVPEKSIGESFGGRITELGYDKPWYKAGGGFAETRSGQGNGFSVKPGFSNHEALKSVKLDAHRQPALNIANKRSSMMSSNWKNSEEEEFTWDEMNSGLTGHGALNVSDNLSTDTWTSDDENLVSLPKLREGEDHLQIAQISNFKKQRPVFAGHQSLSWKMQDQHSIDKLKLKPGHSKELLSTLGGFQTNTNSLSIGMGNRPFMPNATIGMAEVMRQQQFDSGGAESPSGQSPLREQSPSPPRIVRNPHPVRSLAEQDRSHSLKTSQYLKALPSQHIKDPLPALPPNVQVDHLRKSQERDLQDPLSSATSFQPRLQQQKLGPSQTDVTVKTKKPPQSKVTLARETSEQLTTSSLSAAAVKSGTLSNKSTTSSVHTTSSLDKRNLKPKFGVRPTQSSGPSPTTLISSVSVVALPSSLGPSNSDSPTLPKLPQRKAGQPQRVSTQLPASSNVSNASNTTSNASTSNTSNPIANLLSSLVAKGLISSETESPTKVPTEMPSRLEDQTESVAASSSLPVVPVSVSAAVPVSSSRDEVDDTTIPTLALSKSTSTEFINLIGFDFKPDIIREMHPHVISALLDDLPHHCTVCGIRLKLQEQFDRHLEWHAAREREQSGLIMASRKWYAKSNDWIAGKAEYPSECELTDSVDVYDNETEENQLDTMVLADENQCLCVLCGEVFEDVYCHERDAWMFKGAVYLNNTDGDGDSEIENRNLGPIIHARCLSENPISSVT* 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1129 998 MobiDBLite consensus disorder prediction 684 735 - -
Lan5g1129 998 MobiDBLite consensus disorder prediction 488 532 - -
Lan5g1129 998 SMART 558neu5 58 180 IPR006569 -
Lan5g1129 998 MobiDBLite consensus disorder prediction 223 257 - -
Lan5g1129 998 ProSitePatterns Zinc finger C2H2 type domain signature. 852 872 IPR013087 -
Lan5g1129 998 MobiDBLite consensus disorder prediction 190 211 - -
Lan5g1129 998 ProSiteProfiles CID domain profile. 55 183 IPR006569 -
Lan5g1129 998 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 8 997 - -
Lan5g1129 998 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 8 997 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Lan5g1129 998 MobiDBLite consensus disorder prediction 571 648 - -
Lan5g1129 998 MobiDBLite consensus disorder prediction 190 206 - -
Lan5g1129 998 Gene3D - 52 180 IPR008942 -
Lan5g1129 998 MobiDBLite consensus disorder prediction 704 735 - -
Lan5g1129 998 MobiDBLite consensus disorder prediction 1 56 - -
Lan5g1129 998 SUPERFAMILY ENTH/VHS domain 55 177 IPR008942 -
Lan5g1129 998 MobiDBLite consensus disorder prediction 1 31 - -
Lan5g1129 998 MobiDBLite consensus disorder prediction 563 671 - -
Lan5g1129 998 CDD CID_Pcf11 62 172 - -
Lan5g1129 998 Pfam CID domain 65 173 IPR006569 -
Lan5g1129 998 MobiDBLite consensus disorder prediction 488 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1129 Lan-Chr5 24641947 24647453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g1129 824 991 C2H2 Transcription Factor Family AT4G04885 36.095 3.24e-32 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1129 K14400 - gmx:100788958 1101.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g1129 5 24641947 24647453 Lan5g1129 5 24641947 24647453 ECH