Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1100 ATGGGTATGGCGATAGAGAGCACGGAACTAAACGAGGTTGAAACACTAGAAGGTCACACCGATAGGGTTTGGAGCTTAGATTGGAACCCTGCTACCGGTCACTCCGGTATCCCTCTCCTCTTCGCTTCTTGCAGCGGCGACAAAACCGTCCGCGTCTGGGAACAAAACACACTCTCCTCCAACCGCTTTACCTGCAAAGCAGTTTTGGATGAAACACACACTCGAACCGTTCGATCTTGTGCTTGGTCACCTTCTGGTAAACTCTTAGCAACTGCGAGTTTCGACGCCACCACTGCCTTGTGGGAAAATGTTGGAGGTGAATTTGAATGTGTATCTACTCTTGAGGGTCATGAGAATGAAGTGAAGAGTGTGTGTTGGAATGCTGCCGGAAATTTGCTCGCGACGTGTAGTAGAGATAAATCTGTTTGGATATGGGAAGTGCAGCAAGGGAATGATGTTGAGTGTGTTTCTGTTCTCCAAGGACATACTCAGGATGTTAAAATGGTCAAGTGGCATCCTACTATGGATGTATTGTTTTCTTGTAGCTATGATAATACCATTAAGGTTTGGGCAGATGAAGGTGAAAGTGATGATTGGCAGTGTGTTCAAACCTTAGGAGAACCCAATAACGGTCATACTTCTACTGTTTGGTCCATATCCTTTAATGCTAGTGGAAACAAAATGGTTACCAGTAGTGATGATCTTACCCTGAAAGTATGGGAAACAGAAAACATAGAGATCCAATCTGCTGGTGAATTTGCACCTTGGAGACATCTTTGCACTCTCACAGGTTATCATGATAGGACGATTTTCTCTGTTCATTGGTCAAGAGAAGGTATCCTTGCCAGTGGAGCTGCTGATAATGCTATTCGCTTTTTTGTTGATAACAATGAAAGTGAGGTTGGTGATCCAAAGTTCAAGTTGCTGTTGAAGAAGGAGAATGCCCATGACATGGATATAAATTGTGTGCAGTGGAGCCCCGGGGAGAAGCCGCTACTCGCCTCTGCTAGCGATGATGGAACCATCAAGGTATGGGAGCTGGCATCATAG 1050 0.4524 MGMAIESTELNEVETLEGHTDRVWSLDWNPATGHSGIPLLFASCSGDKTVRVWEQNTLSSNRFTCKAVLDETHTRTVRSCAWSPSGKLLATASFDATTALWENVGGEFECVSTLEGHENEVKSVCWNAAGNLLATCSRDKSVWIWEVQQGNDVECVSVLQGHTQDVKMVKWHPTMDVLFSCSYDNTIKVWADEGESDDWQCVQTLGEPNNGHTSTVWSISFNASGNKMVTSSDDLTLKVWETENIEIQSAGEFAPWRHLCTLTGYHDRTIFSVHWSREGILASGAADNAIRFFVDNNESEVGDPKFKLLLKKENAHDMDINCVQWSPGEKPLLASASDDGTIKVWELAS* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1100 349 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 313 349 - -
Lan5g1100 349 ProSitePatterns Trp-Asp (WD) repeats signature. 333 347 IPR019775 -
Lan5g1100 349 Gene3D - 39 349 IPR015943 GO:0005515
Lan5g1100 349 Pfam WD domain, G-beta repeat 199 240 IPR001680 GO:0005515
Lan5g1100 349 Pfam WD domain, G-beta repeat 12 53 IPR001680 GO:0005515
Lan5g1100 349 Pfam WD domain, G-beta repeat 68 101 IPR001680 GO:0005515
Lan5g1100 349 Pfam WD domain, G-beta repeat 154 190 IPR001680 GO:0005515
Lan5g1100 349 Pfam WD domain, G-beta repeat 109 145 IPR001680 GO:0005515
Lan5g1100 349 Pfam WD domain, G-beta repeat 315 345 IPR001680 GO:0005515
Lan5g1100 349 ProSiteProfiles Trp-Asp (WD) repeats profile. 114 155 IPR001680 GO:0005515
Lan5g1100 349 ProSitePatterns Trp-Asp (WD) repeats signature. 133 147 IPR019775 -
Lan5g1100 349 ProSitePatterns Trp-Asp (WD) repeats signature. 228 242 IPR019775 -
Lan5g1100 349 ProSiteProfiles Trp-Asp (WD) repeats profile. 16 54 IPR001680 GO:0005515
Lan5g1100 349 ProSiteProfiles Trp-Asp (WD) repeats profile. 70 102 IPR001680 GO:0005515
Lan5g1100 349 PANTHER CYTOSOLIC IRON-SULFUR PROTEIN ASSEMBLY PROTEIN CIAO1 HOMOLOG-RELATED 5 349 - -
Lan5g1100 349 ProSiteProfiles Trp-Asp (WD) repeats profile. 313 349 IPR001680 GO:0005515
Lan5g1100 349 Hamap Probable cytosolic iron-sulfur protein assembly protein CIAO1 [CIAO1]. 8 349 IPR028608 GO:0016226|GO:0097361
Lan5g1100 349 CDD WD40 15 346 - -
Lan5g1100 349 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 209 244 - -
Lan5g1100 349 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 70 102 - -
Lan5g1100 349 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 114 151 - -
Lan5g1100 349 ProSiteProfiles Trp-Asp (WD) repeats profile. 159 190 IPR001680 GO:0005515
Lan5g1100 349 PRINTS G protein beta WD-40 repeat signature 41 55 IPR020472 -
Lan5g1100 349 PRINTS G protein beta WD-40 repeat signature 228 242 IPR020472 -
Lan5g1100 349 PRINTS G protein beta WD-40 repeat signature 333 347 IPR020472 -
Lan5g1100 349 SMART WD40_4 198 241 IPR001680 GO:0005515
Lan5g1100 349 SMART WD40_4 255 294 IPR001680 GO:0005515
Lan5g1100 349 SMART WD40_4 9 54 IPR001680 GO:0005515
Lan5g1100 349 SMART WD40_4 152 191 IPR001680 GO:0005515
Lan5g1100 349 SMART WD40_4 107 146 IPR001680 GO:0005515
Lan5g1100 349 SMART WD40_4 303 346 IPR001680 GO:0005515
Lan5g1100 349 SMART WD40_4 62 102 IPR001680 GO:0005515
Lan5g1100 349 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 159 190 - -
Lan5g1100 349 ProSiteProfiles Trp-Asp (WD) repeats profile. 209 250 IPR001680 GO:0005515
Lan5g1100 349 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 16 54 - -
Lan5g1100 349 SUPERFAMILY WD40 repeat-like 10 345 IPR036322 GO:0005515
Lan5g1100 349 PANTHER WD40 PROTEIN CIAO1 5 349 IPR028608 GO:0016226|GO:0097361
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1100 Lan-Chr5 24283075 24287138 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g1100 132 347 Miscellaneous Gene Families AT5G08390 24.885 8.56e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1100 K24730 - gmx:100778826 617.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g1100 5 24283075 24287138 Lan19g0380 19 4706283 4711238 LSH