Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1087 ATGTCTTTAAACCATTTCTCACAAGATACAACACAAGCAACAACTCTATGGTGGACTCAACAACAAGAAGGTTCAAGAACACACCCAAAACCCAATAACCCTTTCTTTAACCTTAACAACCAAAACCACAACGATGACGACGTTGAAAACACTCAGCTACCACTCTACGAAGAAGAAGAAGAAGAAGAAACAGTTGAAGAAGAAAAAGAAGGGATGTTTGAAAAAGCATTGACACCAAGTGATGTTGGAAAACTGAACCGTCTTGTGATTCCAAAACAACATGCTGAGAAGTATTTCCCACTCGGTGGTGGTGACTCGGTTGAGAGCAGAGGGTTGTTGCTGAGTTTCGAGGACGAGTCAGGGAAGTGTTGGAGGTTTCGTTACTCGTATTGGAATAGTAGCCAAAGCTATGTTTTAACCAAAGGGTGGAGTCGTTATGTTAAGGATAAGAGACTCGATGCTGGCGACGTTGTTTTGTTTCAGCGACACCGTGCTCATGCTAACCGCCTTTTTATTGGGTGGAGGCGCCGCCATGTCTACGGTGGCTCCACGGTGCCTGTGGCGCATGGTAGCAAGGTTGGAAGTAGTGGTGATGGTAATTGTATTAACGATGGTAGTAAGAATGGGAATGGTGGTGTAACTCAAGGGTGGACCAGAGGGTTCTATTCTGCGCATCCTTCTTATCCTGCGCATCATCATCACTTTGCATACCAAGTTGACTCTCTTCATGAAGGTGGTGGGTCCCAAGAAGGTCAGAAGCAAAAGACAGAAGTGGGGAACAGTTCCAGTTCTAGTTCCAGGGTGTTGAGGTTGTTTGGAGTGAACATGGAATGTGAACCTCAAAATGATTCTGAAACCTTAAGCTCCTATAATATGTCATCAACACAGGGTACAAATACACACCATTTTTATCATCACCATAATCAACCTTCTAATTATTCTTCTACTTCAAACCCTCACCATCACATAATACATCAACAACCACACTAG 990 0.4364 MSLNHFSQDTTQATTLWWTQQQEGSRTHPKPNNPFFNLNNQNHNDDDVENTQLPLYEEEEEEETVEEEKEGMFEKALTPSDVGKLNRLVIPKQHAEKYFPLGGGDSVESRGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFQRHRAHANRLFIGWRRRHVYGGSTVPVAHGSKVGSSGDGNCINDGSKNGNGGVTQGWTRGFYSAHPSYPAHHHHFAYQVDSLHEGGGSQEGQKQKTEVGNSSSSSSRVLRLFGVNMECEPQNDSETLSSYNMSSTQGTNTHHFYHHHNQPSNYSSTSNPHHHIIHQQPH* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1087 329 MobiDBLite consensus disorder prediction 245 266 - -
Lan5g1087 329 MobiDBLite consensus disorder prediction 242 266 - -
Lan5g1087 329 MobiDBLite consensus disorder prediction 20 48 - -
Lan5g1087 329 ProSiteProfiles B3 DNA-binding domain profile. 73 178 IPR003340 GO:0003677
Lan5g1087 329 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 20 299 - -
Lan5g1087 329 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 20 299 IPR044800 GO:0003700
Lan5g1087 329 MobiDBLite consensus disorder prediction 280 329 - -
Lan5g1087 329 SUPERFAMILY DNA-binding pseudobarrel domain 72 176 IPR015300 -
Lan5g1087 329 CDD B3_DNA 72 165 IPR003340 GO:0003677
Lan5g1087 329 Pfam B3 DNA binding domain 73 177 IPR003340 GO:0003677
Lan5g1087 329 SMART B3_2 73 178 IPR003340 GO:0003677
Lan5g1087 329 Gene3D - 67 181 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1087 Lan-Chr5 24186466 24188842 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g1087 66 279 RAV Transcription Factor Family AT5G06250 50.450 2.77e-64 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lan5g1087 B3 2.5e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1087 - - aprc:113872948 324.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g1087 5 24186466 24188842 Lan5g1087 5 24186466 24188842 ECH