Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1084 ATGGGTCGAGTGAGAACAAAGACAGTGAAGAAATCATCACGCCAAGTAATAGAACGCTACTATTCACGCATGACATTGGATTTTCACACCAACAAGAAGGTTCTTGAAGAAGTAGCTCTTATCCCATCAAAGAGGCTTCGCAACAAGATCGCTGGATTTTCAACCCATCTCATGAAACGTATTCAGAAGGGTCCTGTTCGTGGAATCTCACTGAAACTTCAAGAAGAAGAACGTGAACGTCGCATGGATTTTGTTCCTGATGTATCAGCTATTAATATTGATTATATTGAAGTTGATAAGGAAACACTTGATATGCTTACTGCTCTTGGTATTCATGATGTTCCTGGTATTGTTAAGGTTGATCCTGTTCCTGTTAATAACCCACTTGGGTTTGGACGAGGTGCTCCTAGGAGGTTTTAA 420 0.4048 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKVLEEVALIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDVSAINIDYIEVDKETLDMLTALGIHDVPGIVKVDPVPVNNPLGFGRGAPRRF* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1084 139 SUPERFAMILY Rps17e-like 1 62 IPR036401 GO:0003735|GO:0005840|GO:0006412
Lan5g1084 139 PANTHER 40S RIBOSOMAL PROTEIN S17 1 137 - -
Lan5g1084 139 ProSitePatterns Ribosomal protein S17e signature. 41 56 IPR018273 GO:0003735|GO:0005840|GO:0006412
Lan5g1084 139 PANTHER 40S RIBOSOMAL PROTEIN S17 1 137 IPR001210 GO:0003735|GO:0005840|GO:0006412
Lan5g1084 139 Hamap 30S ribosomal protein S17e [rps17e]. 1 63 IPR001210 GO:0003735|GO:0005840|GO:0006412
Lan5g1084 139 Gene3D - 1 62 IPR036401 GO:0003735|GO:0005840|GO:0006412
Lan5g1084 139 Pfam Ribosomal S17 1 120 IPR001210 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1084 Lan-Chr5 24148853 24149503 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g1084 1 139 Cytoplasmic Ribosomal Protein Gene Family AT5G04800 80.142 9.22e-78 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1084 K02962 - gmx:100785402 245.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g1084 5 24148853 24149503 Lan5g1084 5 24148853 24149503 ECH