Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1082 ATGGGTAAGAAAATGAAGGTCCCTTCTCTTCTTAACAACTCAGAAGTTAAGTCCTCTTCTTCTTGGCCTTGGCTATATTGTAACCAACCAAGAACCCTTTCCTTTAGAGACAACAATTGCATATTCAAAACCATTAACCCTGTCTATTTAAATGCCACCAATCCCACCATGGACGTGGTTGAAAGTTCTGAATCCCTTTTCACTATCTCTCCTGACTCTAATAGCTTCTCAACCACTTCTGAAGCATCCAGAAGAGGTCAAGATTCAACGGAGACCGTGATTCGCGAATCACGGTCTGACCGTTTATTCTTCGAGCTAGATGAGACTAGCTCTATACTAGAGGCCAAAAGTGGAGGTAGGGTTCCATTCAAAGATAGTGTTGCTTTTACTATGGATTCACAAGACCCTTATGTGGATTTTCGAAGGTCCATGGAGGAGATAGTAGAGACTCATGGTGTGAAGGATTGGAAGAATCTTGAACAGATTTTTTGTTGGTATTTGAGGGTCAATGAAAAAAGTAGTCATGGTTATATTGTTAGTGCTTTTGTTGATTTATTGGTTAATCTTGAATTTGTTCCGGCTTCTTCATCTTCTTCTAGTTATAGCACTCCTTGTGTTTCTTCTTTGGAAGCTGAGGAGGAAGTTGATAGTACTACTAGTTCATCTTTGTTATTCGAACAAGTTAAGGAGGTGATTAAACATGAAGATGAAAAAGCTTCATCTTCCTCTTCCGATGTTTCATTTTAA 747 0.3909 MGKKMKVPSLLNNSEVKSSSSWPWLYCNQPRTLSFRDNNCIFKTINPVYLNATNPTMDVVESSESLFTISPDSNSFSTTSEASRRGQDSTETVIRESRSDRLFFELDETSSILEAKSGGRVPFKDSVAFTMDSQDPYVDFRRSMEEIVETHGVKDWKNLEQIFCWYLRVNEKSSHGYIVSAFVDLLVNLEFVPASSSSSSYSTPCVSSLEAEEEVDSTTSSSLLFEQVKEVIKHEDEKASSSSSDVSF* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1082 248 Pfam Transcriptional repressor, ovate 133 189 IPR006458 -
Lan5g1082 248 ProSiteProfiles OVATE domain profile. 129 188 IPR006458 -
Lan5g1082 248 MobiDBLite consensus disorder prediction 71 91 - -
Lan5g1082 248 PANTHER OVATE TRANSCRIPTIONAL REPRESSOR 5 228 - -
Lan5g1082 248 MobiDBLite consensus disorder prediction 71 87 - -
Lan5g1082 248 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 127 189 IPR006458 -
Lan5g1082 248 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 5 228 IPR038933 GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1082 Lan-Chr5 24130561 24131476 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Lan5g1082 Ovate 6.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1082 - - tcc:18598361 241.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g1082 5 24130561 24131476 Lan4g1412 4 23177152 23178096 ECH
Lan5g1082 5 24130561 24131476 Lan5g1082 5 24130561 24131476 ECH