Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1080 ATGTCCGGCGGCGCTAGAACTCCGAACCGCCGTGAATATCCACCGCGGGAAGGTTCGACTATACCGAACCGGCCGTCGCTGAAGCGCCACCTCGCCTTCGCATCCACAAAGCCGCCGTTTGCTCCGCCGTATGAGTATCGAAGCTTCTCTGCTTCTCGACCCTCCGATCAAGAGGCTGAAGCTGTTGTTGTTAGATCATCATACATGAAGATGAAGAATGGACTGAATGTCACTGAAGGAGAGTCAAAGGAGACAAGTCAAACTCCTGGATACAATAATGTAATAAATAATCCGTTGACAACTCCTGTGTCTAAAAAAGGGGGAAGGACGTACAATAAAGCAAAGGTTCCAAGGGATGGTAGATTTGGTCCAATGACACCAAAATCAGAAGCTGGATCCCCTTCTCCTGCTAGCAACTGTCGTTATGACAGTTCCTTAGGTCTCTTGACAAAAAAGTTCATCCATTTGCTGAAGCATGCGGAGGGTGGCAATCTTGACCTAAATAATGCAGCAGAAACCTTGGAGGTGCAAAAGAGGAGGATATATGACATAACTAATGTTTTAGAAGGCATTGGTCTAATCGAAAAGAAGATAAAAAACAATATACATTGGAAGGGAGTTGATTGTTCTTCATCGGGTGAGAAAAATGGCAATGTCTCTATGCTGAAGGATGAAGTTGAAAAACTTTCTTTCGAAGAGAACAAACTAGATGATCAAATAAGGGAAATGCAAGAAAGGCTGAGGAGTTTGAGTGAAGATGAAAACAAAAAGAAGTTTTTTTTTGTAACTGAAGATGATATCAAGTCCCTACCTGGCTTCCAGAATGAAACACTAATAGCAATCAAAGCTCCATATGGAACCACTCTGGAAGTCCCTGAACCTGAGGAAGCTGTTGACTATCCACAGAGGAGATATAGGGCTATTCTTAGAAGCACAATGGGTCCAATTGATGTCTACCTTATCAGTCAATTTGAAGAAAAATTTGAAGAGATTAGCTTGCAACATGCTTCAAGTTCAGAGTCCAACGACCGTCTAGCAACAGAAGTCATTCCTGTTGAATGCAGTTATGATGGCCTTCAACCTCAAGCTCAACACTCTTCTCATACATGTTCTGATATAAACAGTGCACAAGAGTTTGGTGGGGGCATGATGAAAATTGTCCCCTCAGATGCCGATACTGATGCAGATTATTGGCTTCTATCAGATGCTGCACCTAGCATAACAGACATATGGAAAACAGATTCTGCCGTGGATTGGAACGCAGTGGACATACTTGATCCTGAATTTGGAATCATGACGCCACAAACTCCATCATCTCAGTTTTCTGAAGCACCACCTGCGGTAGGTAACGATACTACCAGGTGA 1365 0.4337 MSGGARTPNRREYPPREGSTIPNRPSLKRHLAFASTKPPFAPPYEYRSFSASRPSDQEAEAVVVRSSYMKMKNGLNVTEGESKETSQTPGYNNVINNPLTTPVSKKGGRTYNKAKVPRDGRFGPMTPKSEAGSPSPASNCRYDSSLGLLTKKFIHLLKHAEGGNLDLNNAAETLEVQKRRIYDITNVLEGIGLIEKKIKNNIHWKGVDCSSSGEKNGNVSMLKDEVEKLSFEENKLDDQIREMQERLRSLSEDENKKKFFFVTEDDIKSLPGFQNETLIAIKAPYGTTLEVPEPEEAVDYPQRRYRAILRSTMGPIDVYLISQFEEKFEEISLQHASSSESNDRLATEVIPVECSYDGLQPQAQHSSHTCSDINSAQEFGGGMMKIVPSDADTDADYWLLSDAAPSITDIWKTDSAVDWNAVDILDPEFGIMTPQTPSSQFSEAPPAVGNDTTR* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1080 454 PANTHER TRANSCRIPTION FACTOR E2FB 25 442 - -
Lan5g1080 454 PANTHER TRANSCRIPTION FACTOR E2F 25 442 IPR015633 GO:0000978|GO:0006357
Lan5g1080 454 MobiDBLite consensus disorder prediction 432 454 - -
Lan5g1080 454 Pfam E2F transcription factor CC-MB domain 222 322 IPR032198 GO:0046983
Lan5g1080 454 SUPERFAMILY "Winged helix" DNA-binding domain 141 204 IPR036390 -
Lan5g1080 454 Gene3D - 135 209 IPR036388 -
Lan5g1080 454 Coils Coil 222 253 - -
Lan5g1080 454 MobiDBLite consensus disorder prediction 431 454 - -
Lan5g1080 454 Pfam E2F/DP family winged-helix DNA-binding domain 143 206 IPR003316 GO:0005667|GO:0006355
Lan5g1080 454 SMART E2F_TDP_2 141 206 IPR003316 GO:0005667|GO:0006355
Lan5g1080 454 MobiDBLite consensus disorder prediction 78 139 - -
Lan5g1080 454 MobiDBLite consensus disorder prediction 78 107 - -
Lan5g1080 454 MobiDBLite consensus disorder prediction 1 59 - -
Lan5g1080 454 Gene3D - 214 323 - -
Lan5g1080 454 SUPERFAMILY E2F-DP heterodimerization region 219 323 IPR037241 -
Lan5g1080 454 CDD E2F_DD 222 323 IPR032198 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1080 Lan-Chr5 24110161 24115127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g1080 19 454 E2F-DP Transcription Factor Family AT2G36010 50.318 2.02e-140 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Lan5g1080 E2F_CC-MB 1.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1080 K06620 - gmx:100811762 583.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g1080 5 24110161 24115127 Lan5g1080 5 24110161 24115127 ECH