Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1073 ATGGCGACATATTATCATGGTAATTCGGAAATCCAAGGTGGTAGCGCTGATGGACTTCAAACACTCGTGCTCATGAATCCTGGTTATATCCACTACTCTGACGCGCCGCCACAGCCACCTCTTTCTCACGCCCCCACCAACCTTGTTTTCCTCAACAACAATAATAACACCAACACCAACAACAACTTCAACCCTCACGCGCCACAATCTCATCAAACCCAACATTTTGTCGGCGTCCCTCTCTCCTCCTCCGCCGCTGCTGCCGCCTCCCAAGACCTTAACCACCACCACCACTCCATGCACCCCCACCATGACGTGTCGGCCTTGCATGGCTTCATGCCCCGCATGCAGTACAATCTCTGGAACTCAGTTGACACTAATTTGGCGGCGCGTGAGATTCCACGCTCCCAGCAGGGGCTCTCCTTGAGTCTTTCTTCTCAACAGGCTGGGTTCGGGTCTTTCCTGGTTGACCGTGAGGTGCCGACGCAGGTTCAGCCGCCGGATATATCTGGCGACGATCTTGGCGGCAGCTCACCTTCACCGGCTTCAGTGGTCACCAATGGTGGCGCTTCTGGCATTCAGAGTGTGGTTATGAGTTCAAAGTATTTGAAGGCTGCACATGAACTCTTAGATGAGGTGGTGAATGTGAACAATGGGATTAATACTGAATTGGCAAAGAAAAGTGGTGGTGGTTGTGGTGGAGGAAGCAAGGTTATTGGAGAGTCATCTGGTGGTGCAGCTAGTGGAGACGGTGGTTCAATTGGTGGAGAGGGTGGTGGAAAGCGTGAGCTATCAACTGTTGAAAGACAAGAAATTCAGATGAAGAAGGCTAAGCTAATAAGCATGCTTGATGAGGTGGACCGAAGGTACAGACAATACCATCACCAAATGGAAATTGTGGTATCCTCATTTGAACAAGTTGCAGGGATTGGATCAGCAAGAACATACACTTCCCTTGCATTGCAAACAATTTCAAAGCAATTTCGGTGTTTGAAAGATGCCATAACAGGTCAAATTCGTGCTGCAAATAAGAGCCTAGGAGAAGAAGATTATTTTGGAGGTAAAAGTGAAGGTTCTAGGCTCAAATATGTTGATCATCATTTAAGGCAACAGAGAGCTCTACAACAATTGGGTCTGGTTCAGCATAATGCTTGGAGGCCACAGAGAGGTTTGCCAGAAAGATCAGTTTCTGTTCTTCGTGCTTGGCTCTTTGAACACTTTCTCCATCCTTATCCTAAGGATTCAGACAAACACATGCTTGCAAAACAAACAGGACTTACAAGGAGCCAAGTTTCAAATTGGTTTATAAATGCTCGAGTTAGGCTTTGGAAGCCAATGGTAGAAGAAATGTACATGGAGGAAATGAAAGAAAATGAACAGAATAATGGTTCTGAAGACAAATCAAGCAAAAGCAATGAAGACCCTTCTATGAAAAATACAGCTTCATTAGACAAAGTTCCTGCCACTGAAATTGAACCAAAAAGCTTCAATCCCAAGCAACAAGTTTCTAAGAGTCAAAACACTCCAATAGCTGGTGAAAGTGTGAGAAACCAATCAGGATTCAGCTTCAATATTGGGTCATCAGAACTAGATGGTATAACACAAGGAAGTCCAAAGAAAGCAAGGAATCATGAAATCATGCATTCAACAAATAGTGTTCTTTCAATGAACATGGATATCAAACCCAATGAACAGGGTAGAGATGAATACTCTTTTATGGGAAACCAAACAAACTTCATTGGTGGTTTTGGACAATACCCTATTGGTGATATTGGTAGGTTTGATGCAGAACAATTCACACCAAGTTTTCAAGGTAATGGTGTTTCACTCACACTTGGTCTTGACTCATTACCAGGAACACATCAAAATTTTCTTCCAAACCAAAACATTCAACTTGGTAGAAGCATGGATATAAGTGAAACAAATGAGTTTGGTGCTATAAACACTTCTCCTTCTAACTCTACAGCTGCATTTGAGAATATCAACATGCAAAACCCAAAGAGATTTGCAGCACAATTGTTACCAGATTTTGTGGCCCAAATAAGACATTGA 2052 0.4381 MATYYHGNSEIQGGSADGLQTLVLMNPGYIHYSDAPPQPPLSHAPTNLVFLNNNNNTNTNNNFNPHAPQSHQTQHFVGVPLSSSAAAAASQDLNHHHHSMHPHHDVSALHGFMPRMQYNLWNSVDTNLAAREIPRSQQGLSLSLSSQQAGFGSFLVDREVPTQVQPPDISGDDLGGSSPSPASVVTNGGASGIQSVVMSSKYLKAAHELLDEVVNVNNGINTELAKKSGGGCGGGSKVIGESSGGAASGDGGSIGGEGGGKRELSTVERQEIQMKKAKLISMLDEVDRRYRQYHHQMEIVVSSFEQVAGIGSARTYTSLALQTISKQFRCLKDAITGQIRAANKSLGEEDYFGGKSEGSRLKYVDHHLRQQRALQQLGLVQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEMKENEQNNGSEDKSSKSNEDPSMKNTASLDKVPATEIEPKSFNPKQQVSKSQNTPIAGESVRNQSGFSFNIGSSELDGITQGSPKKARNHEIMHSTNSVLSMNMDIKPNEQGRDEYSFMGNQTNFIGGFGQYPIGDIGRFDAEQFTPSFQGNGVSLTLGLDSLPGTHQNFLPNQNIQLGRSMDISETNEFGAINTSPSNSTAAFENINMQNPKRFAAQLLPDFVAQIRH* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1073 683 MobiDBLite consensus disorder prediction 225 263 - -
Lan5g1073 683 CDD homeodomain 385 445 IPR001356 GO:0003677
Lan5g1073 683 SUPERFAMILY Homeodomain-like 386 452 IPR009057 -
Lan5g1073 683 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 6 630 - -
Lan5g1073 683 Pfam Associated with HOX 196 336 IPR006563 -
Lan5g1073 683 Pfam Homeobox KN domain 402 441 IPR008422 GO:0003677|GO:0006355
Lan5g1073 683 Gene3D - 388 467 - -
Lan5g1073 683 MobiDBLite consensus disorder prediction 455 473 - -
Lan5g1073 683 MobiDBLite consensus disorder prediction 163 182 - -
Lan5g1073 683 MobiDBLite consensus disorder prediction 455 542 - -
Lan5g1073 683 SMART HOX_1 385 449 IPR001356 GO:0003677
Lan5g1073 683 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 6 630 - -
Lan5g1073 683 SMART prehox3 191 337 IPR006563 -
Lan5g1073 683 ProSiteProfiles 'Homeobox' domain profile. 382 445 IPR001356 GO:0003677
Lan5g1073 683 MobiDBLite consensus disorder prediction 494 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1073 Lan-Chr5 24022956 24028449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g1073 1 679 Homeobox Transcription Factor Family AT2G35940 50.068 1.01e-172 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lan5g1073 POX 6.7e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1073 - - lang:109348289 1216.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g1073 5 24022956 24028449 Lan5g1073 5 24022956 24028449 ECH
Lan5g1073 5 24022956 24028449 Lan19g0351 19 4285454 4291222 LSH