Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1072 ATGAACGTGAGTGATGAAATTGATGTTCCACCATTTTTTGTATGCCCTATCTCATTAGAAATCATGAAGGATCCAGTTACTATCTCCACTGGCATCACCTACGACCGAGAGAGCATAGAAAAATGGCTTTTCTCTGGTAAAAACAAGACATGTCCTTTAACCAAACAACCCATTTCAGATTCCATTGATCTCACTCCAAACCACACACTTCGAAGACTTATTCAAGCTTGGTGTACCATGAATGCTTCTCATGGCATAGAAAGAATTCCAACACCAAAACCTCCTATCAACAAAACCCAAATAACAAAGCTACTTAATGATGCTTATCATTCACCTCATTTGCTGATTCAATCTCTCAAACAACTCAAATCCATTGCTTCCGGTAGCGAAACGAATAAACGTTGCATGGAAGCTGCGGGTGCTGTTGAATTCTTAGCATCAGCTATAAAAGGCAACACCAACAACAATGATTCTGCAACAAGTGTTGAAGATGAAGCTTTAAGTATACTTCACGATCTTCATGTATCAGAAACTGGATTGAAGACTTTGCTAGGGTTCAAAAACGGTGAGTTTATTGAGTCCTTAACAAGGGTCATGCAAAATGGTATCTATGAGTCAAGAGTTTATGCAGTGTTCTTGTTGAAATCAATGTCTGAAGTGGCTGAACCCTTGCACTTGTTCCATCTAAGAACCGAGTTATTAATGGAATTAGTACATGTATTAAAAGATCAAATTTCACTGAAGGCTTCAAAGGCAACACTTCAGACACTAATACAAGTGTGTCCTTGGGGTAGAAATAGGACCAAAGCAGTAGAAGCAGGTGCTGTATCAGTTCTAATAGAGCTTCTTCTTGATTGCAAGGACAGAAAGCCTTGTGAGATGATGCTTGTGTTGTTGGAATCTCTGTGCCAATGTGCTGATGGAAGAGCTGAACTTTTGAGCCATGGAGCAGGACTAGCCATTGTGTCCAAAAAGATTCTGAGGGTTTCTGTTTTGGCAAATGATAGGGCTGTGAGGATTTTGTTATCTGTTTCTAGATTCTCTGCAACTCCTGGTGTTGTTCAAGAAATGTTGAAACTTGGTGTGGTTGCAAAACTTTGTTTGATGCTTCAAGTGGATAGTGGAAACAAGGCCAAAGAGATAGCAAGAGAGATACTTAAACTTCATGCTAGGGTATGGAGGGTTTCTTCCTGCATACCTAGTACTTTGCTTTCTTCATACCCATCTTATGTGTAA 1236 0.3972 MNVSDEIDVPPFFVCPISLEIMKDPVTISTGITYDRESIEKWLFSGKNKTCPLTKQPISDSIDLTPNHTLRRLIQAWCTMNASHGIERIPTPKPPINKTQITKLLNDAYHSPHLLIQSLKQLKSIASGSETNKRCMEAAGAVEFLASAIKGNTNNNDSATSVEDEALSILHDLHVSETGLKTLLGFKNGEFIESLTRVMQNGIYESRVYAVFLLKSMSEVAEPLHLFHLRTELLMELVHVLKDQISLKASKATLQTLIQVCPWGRNRTKAVEAGAVSVLIELLLDCKDRKPCEMMLVLLESLCQCADGRAELLSHGAGLAIVSKKILRVSVLANDRAVRILLSVSRFSATPGVVQEMLKLGVVAKLCLMLQVDSGNKAKEIAREILKLHARVWRVSSCIPSTLLSSYPSYV* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1072 411 Pfam U-box domain 9 81 IPR003613 GO:0004842|GO:0016567
Lan5g1072 411 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 5 409 - -
Lan5g1072 411 SMART Ubox_2 12 77 IPR003613 GO:0004842|GO:0016567
Lan5g1072 411 CDD RING-Ubox_PUB 13 56 IPR045210 -
Lan5g1072 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 88 IPR013083 -
Lan5g1072 411 ProSiteProfiles U-box domain profile. 8 84 IPR003613 GO:0004842|GO:0016567
Lan5g1072 411 SUPERFAMILY ARM repeat 101 375 IPR016024 -
Lan5g1072 411 SUPERFAMILY RING/U-box 6 85 - -
Lan5g1072 411 Gene3D - 98 398 IPR011989 -
Lan5g1072 411 PANTHER WDSAM1 PROTEIN 5 409 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1072 Lan-Chr5 24017058 24018354 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g1072 3 408 U-box Gene Family AT2G35930 57.805 2.08e-173 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1072 - - gmx:100811258 629.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g1072 5 24017058 24018354 Lan5g1072 5 24017058 24018354 ECH