Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1070 ATGAATGACTTACTCTCTAGTTCATTCTCTGCCTTCCAATCCTCCCCGGACAATAGTAGCAACAACAACAACCATGTCATCGAAATGACTGAAACAACATTGTCACAAGCACCCAACTTAGAAAAATTCTTCTCCCAAGTTGAAACGGTGAAGCAAGAACTCGAAGAACTTGAGTTTCAACACAACAACCTCAAAACCTCCCATGAACTAAGCAAGACCCTTCACAGCGTCAAAGCTGTGAAGGATCTCCGCTCTAGCATGGATGTTGATGTGGCACTCGCACTTAAGAAAGCGAAGATCATTAAGTCCGGGTTGGAGGCCCTGGACAAATCCAACGAAGCAAGTCGATCCCTGCCTGGCTTAGGGGTCGGCTCATCATCGGATCGTACCAGGACCTCAGTTGTGATCGGGTTGAGGAAGAATCTGAAGGATATGATGGAGAGGTTTAATAGCTTAAGGGAGCAAATATCTTCGGAGTATAGAGAGACAGTGCAACGTAGATACTATACTGTTACTGGTGATAAGGCTGATGATAAAACCATTGACCTTCTCATTTCTACAGGTGAGAGTGAAACTTTCTTACAGAAAGCAATCCAAGAACAAGGGAGAGCAACCATAATAGACACAATACAAGAGATTGAAGAGAGACATGGTGCAGTGAAACAAATAGAGAGGAATTTAAACGAGTTGCATCAAGTGTTCTTGGACATGTCAGTGTTGGTTCAAACCCAAGGTGAAGAATTAGATGATATAGAGAGCCACATGGCACGAGCTGATTCGTATATAAGAGGTGGGGTCCAGCAGTTACAAGTTGCTAAGAAGCACCAGAAGAATACTCGTAAATGGACCTGTATTGCAATTATATTGCTTCTCATTATCATATTGGTCATTGTTCTACCTATTGTTTTGAAAAACTAA 918 0.4237 MNDLLSSSFSAFQSSPDNSSNNNNHVIEMTETTLSQAPNLEKFFSQVETVKQELEELEFQHNNLKTSHELSKTLHSVKAVKDLRSSMDVDVALALKKAKIIKSGLEALDKSNEASRSLPGLGVGSSSDRTRTSVVIGLRKNLKDMMERFNSLREQISSEYRETVQRRYYTVTGDKADDKTIDLLISTGESETFLQKAIQEQGRATIIDTIQEIEERHGAVKQIERNLNELHQVFLDMSVLVQTQGEELDDIESHMARADSYIRGGVQQLQVAKKHQKNTRKWTCIAIILLLIIILVIVLPIVLKN* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1070 305 SMART tSNARE_6 205 272 IPR000727 -
Lan5g1070 305 Coils Coil 40 67 - -
Lan5g1070 305 SUPERFAMILY t-snare proteins 39 265 IPR010989 GO:0016020|GO:0016192
Lan5g1070 305 Gene3D - 35 170 - -
Lan5g1070 305 CDD SNARE_syntaxin1-like 209 270 - -
Lan5g1070 305 SMART SynN_4 35 161 IPR006011 GO:0016020
Lan5g1070 305 Gene3D - 194 303 - -
Lan5g1070 305 MobiDBLite consensus disorder prediction 1 24 - -
Lan5g1070 305 Coils Coil 135 162 - -
Lan5g1070 305 CDD SynN 40 197 IPR006011 GO:0016020
Lan5g1070 305 Pfam SNARE domain 248 298 IPR000727 -
Lan5g1070 305 ProSitePatterns Syntaxin / epimorphin family signature. 216 255 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lan5g1070 305 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 210 272 IPR000727 -
Lan5g1070 305 PANTHER SYNTAXIN 18 300 IPR045242 -
Lan5g1070 305 PANTHER SYNTAXIN-121 18 300 - -
Lan5g1070 305 Pfam Syntaxin 42 245 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1070 Lan-Chr5 23997502 23999582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g1070 39 284 SNARE and Associated Proteins AT3G11820 69.919 1.03e-123 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1070 K08486 - gmx:100808718 382.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g1070 5 23997502 23999582 Lan5g1070 5 23997502 23999582 ECH
Lan5g1070 5 23997502 23999582 Lan19g0347 19 4220871 4222714 LSH