LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan5g1069	ATGGCTTCTACAGCTTCTGTTTCCACTGTTATTTCCAACAGAATCTTCAACTTCTCATACACCCACTCACCAATTTCACTCCCCACAAACTTCTGTCTAAGACCCATTTCCCACAAGCCCCTTAACCTCATTCTGAACTCCCAAAGTTTCAATCTTTATCCTCTATCACTTCATAGTCTTCACCCTCCTTTTGCTTCTGAATTTGATGGAGTTGAAGTTGCTCAAGATGTCATCACTGAAGGGACCCAAGAGGATGAACCAGAACCAGAACTAGAACTAGAACCAGAGAACTTTGAGAAACCACCAGAGAAAGAAGAGAAAAATGGGCCAGAGTCAAATGATGGTGGGAGACTCTATGTGGGAAATTTGCCATATTCATTGACTTCTAATCAATTAGCTGAACTTTTTGGAGAAGCTGGAACTGTAGCTTCTGTTGAGATTGTGTATGATCGTGTCACAGACAGAAGCAGAGGATTCGGATTTGTTACAATGAGTAGTGTTGAGGAAGCTAAAGAAGCAATTCAAATGTTTGATGGCTCTCAAGTTGGTGGTAGGACTGTCAAGGTAAACTTCCCAGAAGTGCCCAGAGGAGGTGAAAGGTTAGTGATGGGGCCGAAATTACAGAATAACTACAGAGGCTTCGTTGACAGCCCTCACAAAATCTATGCCGGAAACCTTGGTTGGACAGTGACTTCAGAAGGACTTAAAGATGCTTTTGATCAGCAGCCAGGCATATTGAGTGCCAAGGTCGTCTATGAAAGGGACTCCGGAAGATCTCGGGGTTTTGGGTTTGTCACTTTTGAAACTGCTGACGATGCAGATGCTGCTTTAGAGGCCATGAACGGCGTGGAAGTTCAAGGTCGGGCCTTACGATTGAATTTGGCAGCAATGCGGGCACCTTCATCTCATCCATCGGTTGAGGAAAATACAGAAAGTTACGCTGATAGCTCGGAATTGGTATCTAGTGCCAGCACATGA	978	0.4438	MASTASVSTVISNRIFNFSYTHSPISLPTNFCLRPISHKPLNLILNSQSFNLYPLSLHSLHPPFASEFDGVEVAQDVITEGTQEDEPEPELELEPENFEKPPEKEEKNGPESNDGGRLYVGNLPYSLTSNQLAELFGEAGTVASVEIVYDRVTDRSRGFGFVTMSSVEEAKEAIQMFDGSQVGGRTVKVNFPEVPRGGERLVMGPKLQNNYRGFVDSPHKIYAGNLGWTVTSEGLKDAFDQQPGILSAKVVYERDSGRSRGFGFVTFETADDADAALEAMNGVEVQGRALRLNLAAMRAPSSHPSVEENTESYADSSELVSSAST*	326

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan5g1069	325	MobiDBLite	consensus disorder prediction	303	325	-	-
	Lan5g1069	325	PANTHER	RNA-BINDING PROTEIN CP33, CHLOROPLASTIC	4	307	-	-
	Lan5g1069	325	MobiDBLite	consensus disorder prediction	81	117	-	-
	Lan5g1069	325	SMART	rrm1_1	220	293	IPR000504	GO:0003723
	Lan5g1069	325	SMART	rrm1_1	117	190	IPR000504	GO:0003723
	Lan5g1069	325	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	118	188	IPR000504	GO:0003723
	Lan5g1069	325	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	221	291	IPR000504	GO:0003723
	Lan5g1069	325	PANTHER	OS02G0815200 PROTEIN	4	307	-	-
	Lan5g1069	325	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	219	297	IPR000504	GO:0003723
	Lan5g1069	325	MobiDBLite	consensus disorder prediction	94	112	-	-
	Lan5g1069	325	CDD	RRM_HP0827_like	117	193	-	-
	Lan5g1069	325	Gene3D	-	204	308	IPR012677	-
	Lan5g1069	325	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	116	194	IPR000504	GO:0003723
	Lan5g1069	325	MobiDBLite	consensus disorder prediction	299	325	-	-
	Lan5g1069	325	Gene3D	-	71	199	IPR012677	-
	Lan5g1069	325	SUPERFAMILY	RNA-binding domain, RBD	216	296	IPR035979	GO:0003676
	Lan5g1069	325	SMART	rrm2_1	117	190	IPR003954	GO:0003676
	Lan5g1069	325	SMART	rrm2_1	220	293	IPR003954	GO:0003676
	Lan5g1069	325	SUPERFAMILY	RNA-binding domain, RBD	110	193	IPR035979	GO:0003676

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan5g1069	Lan-Chr5	23993141	23996270	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan5g1069	104	295	Eukaryotic Initiation Factors Gene Family	AT3G16380	32.487	5.01e-22	94.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan5g1069	-		-	aprc:113861916	412.92