Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1068 ATGGCGATGCAAAGTGTTTCTCATAAAGAGCATGAAGGAATTGCTCACAACTCTGTTGGGAGATTGTCTCATGGAAGTTCAGCACCATGGTGGAGTGCTTTTGCATCTCAATCTGCTTATGGCGAGTCTTCTGGTCAAATGAAACCTTTTTCGTTGGAGATTCCGAACTATGTAGACCAACTTGCTGCTACTAAGCAATCAGCAAGAGGAGCTGAACAAGTGTTTGGTAAAAGACATACAACTCAGTTTACAATCTTTCCAGATGTTTGTAAAATGTCAGGTGATTCACCAAAGCTTCAGACATTCATATCGCCGCAGACATCACTTGCTAATACCAACACTCGTTTCGAGCTAGGATTTAGTCAGCCAATGATCTGTGCAAAATATCCTTATGCTGACCAATTTTATGGACTCTTCTCAACTTATGGACCTCAAATTTCGGGACGTATAATGCTTCCACTTGACATGACCTCAGATGATGGACCAATTTACGTAAATGCTAAGCAGTACCATGGAATCATCAGGCGTAGGCAGTCCCGCGCCAAAGCTGTGCTCGCTAACAAATTGACAAAACGTCGCAAGCCCTATATGCATGAATCACGCCATCGTCATGCAATGCGGCGACCAAGAGGATGCGGCGGTCGCTTCCTGAACACAAAGAATTCTGCTAACGGAAATGCTAAAACTGGAACTGAAGTGAATATAGCTTGTGGTCAACAATTGTACTCCAGTGGCTCACAGGGTTCTGAAATTCTGCAATCCGAGGTTGGAACTTTGAACTCATCAAAGGAGACTAATGGAAGCAGTCCAAATATTTCCGGATCAGAGGTGACTAGCATGTATTTACATGGAGGTCTCGACAGCTTCACATTCAACCATCTCGGTTCGGCAGATGTTCACTCTCTGGCTGACATGATAGACGGTGGGCGTGGTATCGTTATGCCCACCAAATGGGTTGCAGCAGGTGGTAACTGCTACAACCTTAATGTTTGA 993 0.4451 MAMQSVSHKEHEGIAHNSVGRLSHGSSAPWWSAFASQSAYGESSGQMKPFSLEIPNYVDQLAATKQSARGAEQVFGKRHTTQFTIFPDVCKMSGDSPKLQTFISPQTSLANTNTRFELGFSQPMICAKYPYADQFYGLFSTYGPQISGRIMLPLDMTSDDGPIYVNAKQYHGIIRRRQSRAKAVLANKLTKRRKPYMHESRHRHAMRRPRGCGGRFLNTKNSANGNAKTGTEVNIACGQQLYSSGSQGSEILQSEVGTLNSSKETNGSSPNISGSEVTSMYLHGGLDSFTFNHLGSADVHSLADMIDGGRGIVMPTKWVAAGGNCYNLNV* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1068 330 MobiDBLite consensus disorder prediction 195 210 - -
Lan5g1068 330 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 4 329 IPR001289 GO:0003700|GO:0006355
Lan5g1068 330 SMART cbf3 158 219 IPR001289 GO:0003700|GO:0006355
Lan5g1068 330 MobiDBLite consensus disorder prediction 195 216 - -
Lan5g1068 330 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 162 216 IPR001289 GO:0003700|GO:0006355
Lan5g1068 330 MobiDBLite consensus disorder prediction 1 20 - -
Lan5g1068 330 PRINTS CCAAT-binding transcription factor subunit B signature 162 184 IPR001289 GO:0003700|GO:0006355
Lan5g1068 330 PRINTS CCAAT-binding transcription factor subunit B signature 193 216 IPR001289 GO:0003700|GO:0006355
Lan5g1068 330 ProSiteProfiles NF-YA/HAP2 family profile. 159 219 IPR001289 GO:0003700|GO:0006355
Lan5g1068 330 Gene3D - 159 221 - -
Lan5g1068 330 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 4 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1068 Lan-Chr5 23988933 23992457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g1068 1 323 CCAAT-HAP2 Transcription Factor Family AT3G05690 41.840 2.39e-57 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lan5g1068 CBFB_NFYA 1.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1068 K08064 - gmx:100815382 507.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0358 9 5417615 5421241 Lan5g1068 5 23988933 23992457 LSH
Lan5g1068 5 23988933 23992457 Lan9g0358 9 5417615 5421241 PCT
Lan9g0358 9 5417615 5421241 Lan5g1068 5 23988933 23992457 PCT