Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1062 ATGGAGGTTCCGGAGATGGAAGGCAAGACTGAAACTCATATGACATCGGCTGCGGCCTTCGTTGAAGGGGGGATTCAAGAATCCTGTGACGATGCTTGCAGCATATGCCTTGAGGATTTTTGTGAAAGTGATCCTTCAACGGTCACTACTTGCAAGCATGAGTTTCACTTGCAGTGCATTCTTGAATGGTGTCAGAGAAGCTCCCAGTGTCCTATGTGTTGGCAACCGATTGAACTGAAGGATCCTACCAGTCAAGAATTGTTCGAAGCGGTAGAGCATGAAAGGAGCTTGAGGGATACTCCATCAAGAAATGCTGCTATTTTCCGTCACCCCGCCCTTGGCGATTTTGACTTCCAGCAGTTACACATTGGCGATTCTGATTTTGAAGAGCGAATAATTCAACATTTAGCTGCTGCTGCAGCAATGGGGAGAGCACAGCACCTTGGTCGGAGGGAAGGGCCGCGAACTAGATCATCTGCTCACGGTCATCCACATTTTTTAGTATTCTCAAATCAGCCTCATGCACCCTCAGGCCCGGATTCAAGTTCTGGAGGGGAAAATGAATCAGCTGCCGTACCTATAGGAAGTTCGTCTACCCTAATGACATCTGATAGAGATGTACCGACACAGCAGATACCACATCTTCAAACTCAAGGCTCTTCTCCAGCTCTTGGATCTAATGTCATGGCATCAAATCGTCAAGGAATATACTCTAGTGATAGAGGCGCTGGTGCTCATTCTTCACCGGTAAACCAAGATAGAGCAGGGCCATCAGAATTCCAGTCATTTTCTGATTCCCTTCGGTCAAAACTTAATGCGGTGTCCATGAGATACAAAGAATCAATTTCAAAAGGCGCAAAGGGATGGAGGGAGAGGCTGTTCTCTCGTAGTACTTCCATGTCAGAAGTTGGTTCAGAAGATAGAAGAGAGGTAAACGTTGGCATTGCCAGTGTATCCCCATCGGCGGAATCCCTTGAAACAAGAGAAAATAATAGACCTGTGGGTACTTCTTTGTCAAATCATTTGGAGGATCGCTCTATTACAGCAGAGGCACGCAACCGGAACACCGTGGAAGGTAGTGGAGAGAACTCATCACATGATAACACTACTCCGGATGCTTGTCCTGCTGGCTCACATTAA 1140 0.4693 MEVPEMEGKTETHMTSAAAFVEGGIQESCDDACSICLEDFCESDPSTVTTCKHEFHLQCILEWCQRSSQCPMCWQPIELKDPTSQELFEAVEHERSLRDTPSRNAAIFRHPALGDFDFQQLHIGDSDFEERIIQHLAAAAAMGRAQHLGRREGPRTRSSAHGHPHFLVFSNQPHAPSGPDSSSGGENESAAVPIGSSSTLMTSDRDVPTQQIPHLQTQGSSPALGSNVMASNRQGIYSSDRGAGAHSSPVNQDRAGPSEFQSFSDSLRSKLNAVSMRYKESISKGAKGWRERLFSRSTSMSEVGSEDRREVNVGIASVSPSAESLETRENNRPVGTSLSNHLEDRSITAEARNRNTVEGSGENSSHDNTTPDACPAGSH* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1062 379 MobiDBLite consensus disorder prediction 317 344 - -
Lan5g1062 379 MobiDBLite consensus disorder prediction 174 238 - -
Lan5g1062 379 Pfam Ring finger domain 32 73 IPR001841 -
Lan5g1062 379 SMART ring_2 33 73 IPR001841 -
Lan5g1062 379 MobiDBLite consensus disorder prediction 315 379 - -
Lan5g1062 379 SUPERFAMILY RING/U-box 25 81 - -
Lan5g1062 379 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 9 378 - -
Lan5g1062 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 82 IPR013083 -
Lan5g1062 379 MobiDBLite consensus disorder prediction 352 379 - -
Lan5g1062 379 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 9 378 - -
Lan5g1062 379 MobiDBLite consensus disorder prediction 144 264 - -
Lan5g1062 379 ProSiteProfiles Zinc finger RING-type profile. 33 73 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1062 Lan-Chr5 23925072 23930652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g1062 30 81 C3H Transcription Factor Family AT4G00335 46.154 1.14e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1062 K19043 - gmx:100800419 534.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g1062 5 23925072 23930652 Lan5g1062 5 23925072 23930652 ECH
Lan9g0351 9 5329632 5334333 Lan5g1062 5 23925072 23930652 LSH
Lan5g1062 5 23925072 23930652 Lan19g0337 19 4097278 4101622 LSH
Lan5g1062 5 23925072 23930652 Lan9g0351 9 5329632 5334333 PCT
Lan9g0351 9 5329632 5334333 Lan5g1062 5 23925072 23930652 PCT