Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1058 ATGCCCAACTTCAAAATGAGGTACCTTTTGTCCAATCTCAGAAGAACACCAAAGAAAAACACCAAAATCAAAAGCAGAATCAGAAACAAGAACATGGGCAAGTTCAAAAACCAATCTTTGATTTCCACCACAAAACAGTTACAATGTCTAGAAGAAGAAGGCAGTGATGAATGTTTCAGCCTCAAAAGCACTACACAATCACACACTCATGGTGTTCAACCATTGGGTAATCTTTACCTCAGTTCAGGTTCCATCAATTCCAGAGACACAGGTTTAGGTAATCTTCACACCCTTTCAGATGAGCTTGTTCTTGAGATTCTAGGGTTTTTGGGTGCTTCTGAATTAGGGGTTTTATCTACTGTGAGTAAATCACTTTATGTTTTCACTAACCATGAACCACTTTGGAGGAATCTTGTGTTGGAGAATTTTGTTGGTGGGTTTCAGTTTAATGGGTTTTGGAAATCTACTTATGTTTCTGCTTGTTACCCTTCATTTGATTTGTCGAGTAATGAGCTTCGGAGTTTCAAAGTTAGAGACTTTTATTCTGATTATCTTTTCCAGAGTTGGCTCTGTGCTAATCTGGAAATGAAGCCTGAATGGTTGGAGAGGGATAATATAGTTAGGAAGAAGGGTATTTCGGTTGAGGAGTTTGTGTTGAACTTTGAGGAGCCAAATAAGCCGGTGTTGTTGGAAGGGTGTATTGATAATTGGGATGCATTGAGAAACTGGGATCGGGATTATTTGATGCAGTTGTGTGGTGATGTTAAGTTTTCTGTTGGACCACTGGAGATGAAGCTCGAAGACTATTTTCGATACTCGGATCAAGTTAAAGAAGAAAGACCGTTGTATTTGTTCGATCCAAATTTTGCTGAGAAAGTTCCGAAATTGGGTTCTGAGTATGAAGTTCCGGTGTACTTCCGGGAGGATTTGTTTGGTGTTTTGGGCAATGGGAGACCTGATTATAGATGGGTTATTATTGGACCAACCGGGTCTGGATCTTCTTTCCACGTAGATCCAAATTCGACTTCAGCTTGGAATGCAGTTATCACAGGATCCAAGAAATGGCTATTATTTCCTCCCGATGTGATTCCACCGGGAGTTCATCCTAGTCCTGATGGTGCGGAGGTTGCATCTCCTGTTTCGATAATTGAATGGTTCATGAACTTTTATGGTGCAACGAAAAATTGGAAAAAGAGACCGATTGAGTGCATATGCAAAGCTGGGGAGGTTATCTTTGTGCCTAACGGATGGTGGCATTTGGTGATCAACCTGGAGGAGTCTATAGCGATAACCCAAAACTATGTTAGCAGGAGAAATTTGTTAAATGTGTTGGATTTTCTTAAAAGGCCAAATGCTAGCACACTGGTATCCGGAACAAAGGATCGAGTGAATTTATATTGTAAGTTTAAGAATGCCATTGATGGTTCTTTTCCCGGAACAATAGAAGAACTGGCCGAAAAAGAAGAAGAGAAGAAAATGCAGCAAAGGAAACTTCCCTTCTGGGATTCTGTCACAGATGCTAACATGGGAGCTTTCAAGTTCTCTTTCTAG 1551 0.4049 MPNFKMRYLLSNLRRTPKKNTKIKSRIRNKNMGKFKNQSLISTTKQLQCLEEEGSDECFSLKSTTQSHTHGVQPLGNLYLSSGSINSRDTGLGNLHTLSDELVLEILGFLGASELGVLSTVSKSLYVFTNHEPLWRNLVLENFVGGFQFNGFWKSTYVSACYPSFDLSSNELRSFKVRDFYSDYLFQSWLCANLEMKPEWLERDNIVRKKGISVEEFVLNFEEPNKPVLLEGCIDNWDALRNWDRDYLMQLCGDVKFSVGPLEMKLEDYFRYSDQVKEERPLYLFDPNFAEKVPKLGSEYEVPVYFREDLFGVLGNGRPDYRWVIIGPTGSGSSFHVDPNSTSAWNAVITGSKKWLLFPPDVIPPGVHPSPDGAEVASPVSIIEWFMNFYGATKNWKKRPIECICKAGEVIFVPNGWWHLVINLEESIAITQNYVSRRNLLNVLDFLKRPNASTLVSGTKDRVNLYCKFKNAIDGSFPGTIEELAEKEEEKKMQQRKLPFWDSVTDANMGAFKFSF* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1058 516 ProSiteProfiles JmjC domain profile. 291 451 IPR003347 -
Lan5g1058 516 SMART fbox_2 98 138 IPR001810 GO:0005515
Lan5g1058 516 PANTHER AND JMJC DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G08170)-RELATED 62 514 - -
Lan5g1058 516 Gene3D Cupin 183 436 - -
Lan5g1058 516 Pfam F-box domain 98 136 IPR001810 GO:0005515
Lan5g1058 516 ProSiteProfiles F-box domain profile. 92 138 IPR001810 GO:0005515
Lan5g1058 516 SUPERFAMILY F-box domain 90 158 IPR036047 GO:0005515
Lan5g1058 516 Pfam Cupin-like domain 216 434 IPR041667 -
Lan5g1058 516 SMART cupin_9 282 451 IPR003347 -
Lan5g1058 516 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 62 514 - -
Lan5g1058 516 Gene3D - 87 164 - -
Lan5g1058 516 SUPERFAMILY Clavaminate synthase-like 208 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1058 Lan-Chr5 23893591 23895875 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g1058 83 440 Glycosyltransferase AT1G78280 36.314 1.06e-73 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lan5g1058 Cupin_8 5.9e-23 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1058 - - lja:Lj1g3v4753250.1 854.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g1058 5 23893591 23895875 Lan5g1058 5 23893591 23895875 ECH