Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1043 ATGGCTTCGAGGTTCTGGACACAGGGTGGTAGTGATTCTGAGGAGGAGGAGGAAGGAAGTGATTATGAAAATGAGGAAAGGGAAAATGAAGTAGCAGGCGAACCTTCTAATGCTGCTAAGTATATCCGGGGTAATGCAAGTGACAGTGATGACTCTGATGGCGAGAAGCGTGTCGTCAGGTCTGCAAAAGATAAGCGTTTCGAGGAGATGACTCTTACTGTTGACCAAATGAAGAATGCCATGAAGATTAATGATTGGGTCAGTTTGCAAGAGAGCTTTGACAAGATCAACAAACAGCTTGAAAAAGTTATGCGTGTTACTGAGTCTGACAAGGTCCCCAATCTTTACATTAAGGCACTTGTGATATTGGAAGATTTCTTGGCTCAGGCTTTGGCAAATAAGGAAGCCAAAAAGAAGATGAGTAGTAGCAATGCTAAGGCGTTGAACTCAATGAAGCAGAAATTGAAGAAAAACAATAAGCAATATGAGGACTTGATCAATAAAAGCCGGGAGAGCCCTGAGAGTGACGGCGAAAAGGAAGAAGAGGAGGATTCTGAGGAAGAGTATGAGAGTGACGATGAGATTATCGAGCCGGATCAGCTTAGCAAGAAAGTAACAAAATCTGATTCTGAAGCTGATGGTTATGATGATGATAAGGCAGATGCTGCTGATGGACCGTGGGATCAAAAGCTTAGCAAGAAAGATAGGCTTATGGATAAGCAATTTATGAAAGACCCTAGTGAGATTACTTGGGACATAGTTAACAAGAAGTTCAAAGAGGTTGTGGCAGCTAGAGGCAAGAAGGGTACTGGAAGGTTTGAACAGGTGGAACAGCTCACGTTCTTAACCAAAGTTGCTAAAACACCTGCACAGAAGCTGGAAATTCTTTTCAGTGTGGTTTCTGCTCAGTTTGATGTTAATCCCGGCCTTAGTGGGCATATGCCTATAAATGTGTGGAAAAAATGTGTGCAGAACATGCTGATCATTCTTGATATTCTAGTGCAGTACCCAAACATAGTGGCTGATGATTCAGTGGAGTCAAATGAGAATGAAACTCAGAAAGGTGCTGACTATAATGGACCAATTCATGTTTGGGGTAACTTAGTAGCTTTCTTGGAAAAAATAGATGCTGAGTTTTTCAAGAGCCTACAGTGCATAGATCCTCATACCCGTGAGTATGTTGAGAGACTGAGGGATGAGCCTATATTTCAGGTTCTTGCTCAGAATGTTCAGGAATATCTTGAAAGGAGTGGAGATTACAAATCTGCTTCTAAGGTAGCATTGAGGAGGGTTGAACTTATTTATTACAAACCACAAGAGGTTTATGATGCCATGAGAAAACTTGCTGAGCTGACAGAAGATGGAGATAATGATGGGAAGGCAGGGGAGGAGTCCAAAGGGAATGAATCAACAAGAATTCCTACTGCCTCTGTTGTTACTCCGGAGATTGTACCCCGAAAGCCTACCTTTCCTGAGAGTAGCAGGACCCAAATGGATGTATTGGTATCACTGATATACAAATATGGCGATGAGCGCACTAAAGCACGGGCAATGCTTTGTGATATATATCATCATGCTCTTCGTGATGAGTTCTCAATTGCCCGTGATCTACTACTTATGAGCCATTTGCAGGATAGTGTTCAGCATATGGACATTTCAACACAGATACTATTCAACAGGGCTATGTCACAGTTGGGTCTATCTGCTTTTCGTGTTGGACTGATTTCTGAAGCACACGGCTGTCTATCTGAACTTTATTCTGGTGGTAGGGTGAAGGAGTTGCTTGCTCAAGGTGTGTCTCAAAGTCGTTATCATGAGAAGACTCCAGAACAGGAACGGTTGGAAAGACGACGTCAAATGCCATATCATATGCACATAAATCTTGAGCTCCTGGAGTCAGTGCATCTAATATCTGCTATGCTGCTGGAAGTTCCCAATATGGCTGCCAATGTTCATGACTCAAAGCGGAAAATCATCAGCAAGAATTTCCGCCGTTTGCTTGAGGTCAGTGACAGACAATCATTCACAGGGCCACCTGAAAATGTCAGAGATCACGTTATGGCTGCCACAAGGGCTCTTAACAAGGGAGACTTCCAGAAGGCTTATGATGTTATTGTCTCTCTTGATGTATGGAAATTTGTGAGAAATCGAGATGCTGTGCTTGAAATGCTGAAGTTCAAAATCAAGGAAGAGGCATTGAGGACATACCTCTTTACCTTCTCTTCCTCATATGATTCCTTAAGCCTGGATCAGCTCACAAAAATCTTCGACCTCTCCGTTCCCCACACTCATAGCATTGTTAGTAAGATGATTATCAATGAGGAGCTTCATGCAAGCTGGGACCAGCCAACCGGGTGCATTGTCTTCCAGGATGTTGAGCACACTAGGTTGCAGGCATTGGCATTCCAGTTGACCGAGAAATTAACTATCCTTGCTGAGAATAACGAAAGAGCAACAGAGGCTAGGATAGGTGGTGGATTGGACCTGCCTCAAAGGCGGAGGGACGGTCAGGACTACGCGGCTGGTGGTGGAACAGGCACTTTAGGTGGTGGTGGCAGGTGGCAAGATTTGTCCCTTTCTCAGCCAAGGCAAGGTAGTGGCCGTGCAGGAGGATACAGTGGTGGTGGAAGAGTATTCAATCAGGCAGGTGGTGGCTATTCGAGGGACCGAGGCGGTCGAGGTTATCAGAGTACAAGGTATCAAGATACTGCAAATGGAGGGAGGAGTCAAGGTGGTTCATCATTGAGGGGAACCCAAGGGGATATATCTACTCGTATGGTTAGCCTTAAGGGAGTTCGTTCCTAA 2805 0.4435 MASRFWTQGGSDSEEEEEGSDYENEERENEVAGEPSNAAKYIRGNASDSDDSDGEKRVVRSAKDKRFEEMTLTVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESDKVPNLYIKALVILEDFLAQALANKEAKKKMSSSNAKALNSMKQKLKKNNKQYEDLINKSRESPESDGEKEEEEDSEEEYESDDEIIEPDQLSKKVTKSDSEADGYDDDKADAADGPWDQKLSKKDRLMDKQFMKDPSEITWDIVNKKFKEVVAARGKKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLSGHMPINVWKKCVQNMLIILDILVQYPNIVADDSVESNENETQKGADYNGPIHVWGNLVAFLEKIDAEFFKSLQCIDPHTREYVERLRDEPIFQVLAQNVQEYLERSGDYKSASKVALRRVELIYYKPQEVYDAMRKLAELTEDGDNDGKAGEESKGNESTRIPTASVVTPEIVPRKPTFPESSRTQMDVLVSLIYKYGDERTKARAMLCDIYHHALRDEFSIARDLLLMSHLQDSVQHMDISTQILFNRAMSQLGLSAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLESVHLISAMLLEVPNMAANVHDSKRKIISKNFRRLLEVSDRQSFTGPPENVRDHVMAATRALNKGDFQKAYDVIVSLDVWKFVRNRDAVLEMLKFKIKEEALRTYLFTFSSSYDSLSLDQLTKIFDLSVPHTHSIVSKMIINEELHASWDQPTGCIVFQDVEHTRLQALAFQLTEKLTILAENNERATEARIGGGLDLPQRRRDGQDYAAGGGTGTLGGGGRWQDLSLSQPRQGSGRAGGYSGGGRVFNQAGGGYSRDRGGRGYQSTRYQDTANGGRSQGGSSLRGTQGDISTRMVSLKGVRS* 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1043 934 Pfam PCI domain 662 790 IPR000717 -
Lan5g1043 934 Coils Coil 145 172 - -
Lan5g1043 934 MobiDBLite consensus disorder prediction 1 62 - -
Lan5g1043 934 SMART PINT_4 723 811 IPR000717 -
Lan5g1043 934 MobiDBLite consensus disorder prediction 12 28 - -
Lan5g1043 934 MobiDBLite consensus disorder prediction 826 934 - -
Lan5g1043 934 MobiDBLite consensus disorder prediction 453 473 - -
Lan5g1043 934 Gene3D - 734 797 IPR036388 -
Lan5g1043 934 MobiDBLite consensus disorder prediction 176 195 - -
Lan5g1043 934 MobiDBLite consensus disorder prediction 196 228 - -
Lan5g1043 934 MobiDBLite consensus disorder prediction 139 155 - -
Lan5g1043 934 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 895 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lan5g1043 934 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C 1 930 - -
Lan5g1043 934 SUPERFAMILY "Winged helix" DNA-binding domain 723 793 IPR036390 -
Lan5g1043 934 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 47 653 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lan5g1043 934 ProSiteProfiles PCI domain profile. 622 794 IPR000717 -
Lan5g1043 934 MobiDBLite consensus disorder prediction 46 62 - -
Lan5g1043 934 MobiDBLite consensus disorder prediction 139 158 - -
Lan5g1043 934 MobiDBLite consensus disorder prediction 164 228 - -
Lan5g1043 934 MobiDBLite consensus disorder prediction 453 467 - -
Lan5g1043 934 MobiDBLite consensus disorder prediction 894 925 - -
Lan5g1043 934 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 723 811 - -
Lan5g1043 934 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 930 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1043 Lan-Chr5 23704780 23709446 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g1043 1 934 Eukaryotic Initiation Factors Gene Family AT3G56150 68.432 0.0 1182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1043 K03252 - gmx:100805203 1390.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g1043 5 23704780 23709446 Lan19g0325 19 3931532 3935483 LSH