Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1042 ATGGATACACCAACGATTGATGTGGACCTCGGCGGGCCGGAGAAAGTTGAAGAGGTGAAAGAGGGGGATCAATTGTTCCGTTGTGATCTCTGTGATACAGAAGTAATTCACAAGTTGGCTCAGATGTTGCTTCCGGGACTTGCTTCGGCTTGTGTTGACAACACATCAGGAGGTCTCTTCAAGACTCCTGGTTCAGTGGCTGATGATTTGAGAAAGGAAATGATAGATTATGTTACCCAGAGAAGCGAATCGTTCGTTGCCGAGTCTGTTATATTGGAAGGTGGTCCGGATAGTGAAGTATCAGATCATCCTTTTGATATCATTTCTAACATGGTTGATGACTTTGTGATTTTAAAGAGGAATTTCTTTAGCCGTGTTTCGGGATGGCTGTTAAGTGAAAGGAGGGAAGACAAGATAGAGGATTTCGTTCAAGAGATGGAAAAGAAAGGTTTTTGGACTTTAGATAGAAGGGAAACAATTGCAGAAACTTTCCTTAAGAATGTTGATTTTGAGAACAAATTTCATTGTGGTATGAAGATCAATTCTCCCGAAGAGCTTTCGAATCATGTTGGCGAGTGCAACTTCAGATCTATATTCTGCGAAAGCGAGGGATGCAATGCTAGATTTTGTGCAAGTCATCTGAAGCAGCATGATTCAACTTGTCCCTTCAAGATAATTCCGTGTGAACAGAGGTGTTCGGATAGCATTATGAGACGTGACATGGATAGGCATTGTATAACTGTGTGTCCCATGAAGCTTGTAAACTGTCCTTTTTTCGTCGTGGGTTGTCGGTCTGCCATTGTGCAATGTATGATTGATAAGCATCGTTCGGATGATGTTCATTCTCACTTGTGGCACCTGCTTAAAGGCACACACAAGCAAGCAAATGGCGAAGATCTTCAACGGCGAGTAGAGGAAATTCTTCAGGCTGAATCAAGCGGACGGTTAGCTCAGGCTCGGGATGTGAGATCTTTAAACTTAATTGTCAATGGTATTGAAGCTAAGTTAGGGCCTATGAAGTTGAGCGCCATGGAAAAACATAGTGCGGAGACTGTTACCAAGAATGCTGAGGGAGAAGTTGGTAACACCGATACGAAGGGCAATGAACAGAGCACACAGGATTCAGATACGGTAAATTCATCAGATAAAGCTGACAAGGGTGACATTGTGAATATATATAGTGCAGAGAATAGTGCCAAGACCGAGGATAGCGAACATAGTCATGTCGAAGAAAAGGATGGTGAAGAGAGGACACAAGCATCAAATATGGTAAATCTATCATATAAAGCTGAGGATACTGCTAAGAGTGATGATAGTGAACACGATCTCATTGAAAACAAGGACAGCAAAGAGAGGACACGGAGTTCCGATATGATTAATTTATCTGATAAAGCAGAAATTAATGTTGCAAACGACGATGGCACACAGGTTCACAAGGAGAACCAAGATGCCCCAGATAGTGAAATACTTAAGGGCAACAAAGAGAGCACTCAGACAAATTTGGAAAAAGAATCATATAAAGGAGAAATCAGTGCCACAAATGAGGACAATGCAGAGACTACCACTACAAACAAATATATTGAAGACATCAACTTTGAAGATAAGGATAAGGAAAAAGACATTCGAAATTCGGAATTGGATACTAAGAACAAAGACACTGAATATGATAACTTGAAAGAGACCATAAACACTTCAAAGGTGCAAAATAGTATATTGCAGCACTACATCAATGCCGATTGGATACAACAGTCTTCTCAGTCTTGGGTTGAACGATGCCAGAATGCACATAGTGCCGAATCAGTAGAGCTGCTGAAGGAGGAATTGTTTGATTCTATTTTGTGGAATGTTGTCAATACACTTGGGGATGCACTGCTGCAACCAACAATAAGTTCTGTTTGGAAAACCTGGAAGCACGATGTAATGAAATTGTTTTCCACATTTCCTTCCTTATCTAGCTGCAAGGACAGGCAGCAGCAGATCCCTGATGGTTCGTACCAACTCAGTCTTCAGGCTGGAAGAAAAAGGCCCAAACTTGAAGTTCGTCGTGCAGATACACATGCTTCACAAGTGGAGATGAAGGGTTCAAGCCACTCTATTACTCTCGAGACTGACCCAGGTTTCTTTAAGAATCAAGACAGATTGAGTTCATTGGCAGCTGAGACTTCCAAACAGGCATATTTTAGGGAGGTGCCTATTGAATTTGATTCACCTGATAGTTTGTCCGATAAATGGAATAAAATTGTAGCTGAGGCTGTAGATCCCAAGATCTTGCATACAGATGGAATGGAATCAACGCCTATGAATGAAATGCCTGGTAAAAAAATTGTTGAATCTGGTAGTAAGAATCAACAATGTATAGCTTATATTGAAGCCAAAGGAAGACAGTGTGTGAGGTTGTCTATTGATGATGATGTATACTGTTGTGTGCATTCTCGTTATTTGGGCAGCTTAGCAAAAACTGAAAAACCTGTTTCAGTTGATACTCCAATATGTGATGGTACCACAGTTCTTGGTACTAGATGTAAGCATCATGCCCTTCCTGGATTTTCGTTCTGTAAGAAACATCAGCCTCATGCTGAAACGGGTCAGACTTCTAATTTAACCCATAATACACTAAAGAGGAAACATGAAGAAAATTACTATGGTTCGGAGGGCTTGTTTTGCAAAGACTTGGTACTGGTAAATGTTGGAAGTCCATTGCAAGTAGTACCCGTGTCAGTAATTGGCAGTGATTCCTTCCATGGACAAAGTAACTTACATCATAAGCCCATTCATTGCGGCAATGGTCAAAATGCAATGGAGGCACTTCACTGTATAGGCTCTCCTCCCTATAATGACAATGACCGTTGTTTGGAAGCTCCAAATTGGTATTCCTTGTACTGTGAAATGCACCTTCCAAGCTGGCTTAAACGTGCAAAAAATGGAAAGAGCAGGATAATATCAAAAGAAGTGTTCACAGAACTTCTAAGGGACTGCTACTCATGGGAGCAAAAGCTACATCTCCACAAAGCATGTGAACTTTTTTACGGGCTATTCAAAAGCATTTTAGCACCAAGAAACCAAGCTCCTAAGGAAGACCTATTCCAGGCGGCTTTGGCTGAAGCCTCTAAAGATACTAGTGTTGAAGAAATGTTTACAAAGTTGGTTCATAGTGAAAAGGAAAGTCTCAAATTGATTTGGGGTTTCAATGATGACACAGATGCATCCCTATCAGTGGAAGGACTGCTTCTCCTTCCCTCCACAACTAATGACAACTTTGATGATGAGAATGCGATAAAGTGTAAGATCTGCTTTGCACAATTTCCGGATGACCAAACACTTGGTAACCATTGGATGGAGAATCATAAAAAGGAAGCACAGTGGCTGTTTAGAGGTTATGCTTGTGCCATTTGTCTGGATTCTTTCACAAACAAGAAACTACTGGAAACTCATGTTCAGGAGAGACATCGTGTGCAGTTTGTTGAACAGTGCTTGCTTCTACAATGTATTCCTTGTGGTAGTCATTTTGGAAATATTGAGGAATTATGGCTGCATGTTCTATCAGTTCACCCTGTTGAATTTAAACGATCCAAAGCTCCTGAGAAGCAAATTTTGCCTACTATTGAGGAGGAGCCTCCAAAACAACCTGAGCAGGGAAATTCAGCTTCTTTAGAGAATAATTATGAGAATCCAGGCAGCACTCGGAAGTTTGTTTGCAGGTTTTGCGGGTTGAAATTTGATTTACTACCTGACCTAGGTCGCCACCATCAAGCTGCTCATATGGGGCGCAATCTAGTTACCAACCGCCCTGCAAAGAAGAAAGTTCATTATTATTCACATAGATTAAAATCTGGAAGACTTGGCCGTCCTAGATTTAAAAACGGTCTGGCTGCTGCATCATATAGGATCAGTAAGGCTAATGTAAATTTGGAGAAGAGTATTGAGACTATAAAATCACTTGACAAAGGAGAAAAAACCTTACATTCACAAGGAGCTGAGACTGAAAATACTGTCATATTGGAAGAATATCAATGCTCAGCAGTTGCAAAGGTTTTGTTTTCTGAGATGCATAAGACTAAACCTAGGCCTAACAATCTTGATATTTTATCCATTGCTCGCTCTGCTTGCTGCAAAGTTAGTCTTAAAGCCTCACTGGAGGAGAAGTATGGAATTTTGCCTGAAAAACTCTATTTGAAGGCAGCAAAACTTTGCAGTGAGCATGACATTCTAGTGAACTGGCACCAGGATGGATTCATTTGTTCTAAAGGTTGTAAGGTATTGAAGGACCAAACGTTTCCCTTGGTATCTCTTTCTAATGGTTACCCAAGGCCAAAATCAGTAAGTTTACCGCATCCTACTACTGAAGAGTTGGAGGTTGATGAGTTTCACTACATTATCAATTCAAACCAGTTAAAATTTGGGTCCTCGCAAAAGGGCGTAGTCTTATGTGGTGACCTAAGCTTTAAGAAGGAATCAATTCCAATTATTTGTGTGGTAGATGAAGAAATTCTAAATTCACAAATGCAGGGGGTTAATGAGAAAGATAGAAATCCTTTTAGGCCCTGGGAGAGCTTTACCTATATTACAAAGCCGATGCTTGATCCATCCCTCAATCTTACTTCTGAGAGTCTGCAACTGGGATGTGCTTGCTCAGTTTCTACCTGCAGTCCTGAAAGATGTGATCATGTATACCTTTTTGATACTGACTATGATGATGCAAAAGATATCTTTGGGAAACCAATGCGTACTAGGTTCCCATATGATGAGAATGGTCGAATAATATTGGAGGAGGGTTACCTTGTCTATGAGTGTAACCGTATGTGCAGATGCAATAAAACCTGTCCAAACAGAATATTGCAGAATGGAGTTCGGGTTAAATTGGAAGTCTTTAAAACAGAGAAAAAGGGATGGGCGGTAAGAGCTGGTGAGGCTATCATCCGTGGCACATTTGTGTGCGAGTACATTGGAGAGGTTTTAGACGAGCAGGAGGCACACATTAGGCGCAAGAGATACGACAAAGAAAATTGCTGCTATTTGTATGACATTAGTGCTCATGTCAATGATATGAGTAGATTGATCAAAGAACAGGCCAAATATGTCATTGACTCTACTAGATATGGAAACGTCTCAAGGTTCATCAATAATAGCTGCTCACCCAATCTTGTGAGTCACCAAGTTCTTGTAGAGAGCATGGATAGTGAGCTTGCACATATTGGTCTTTATGCGAGTCGAGATATTGCTTTGGGTGAAGAACTGACATTTAATTATCATTATGAGCTTGTGCCCGGAGAGGGAACTCCTTGCCTTTGTGGATCTTTAAACTGCCGAGGACGCCTTTTCTAG 5322 0.4098 MDTPTIDVDLGGPEKVEEVKEGDQLFRCDLCDTEVIHKLAQMLLPGLASACVDNTSGGLFKTPGSVADDLRKEMIDYVTQRSESFVAESVILEGGPDSEVSDHPFDIISNMVDDFVILKRNFFSRVSGWLLSERREDKIEDFVQEMEKKGFWTLDRRETIAETFLKNVDFENKFHCGMKINSPEELSNHVGECNFRSIFCESEGCNARFCASHLKQHDSTCPFKIIPCEQRCSDSIMRRDMDRHCITVCPMKLVNCPFFVVGCRSAIVQCMIDKHRSDDVHSHLWHLLKGTHKQANGEDLQRRVEEILQAESSGRLAQARDVRSLNLIVNGIEAKLGPMKLSAMEKHSAETVTKNAEGEVGNTDTKGNEQSTQDSDTVNSSDKADKGDIVNIYSAENSAKTEDSEHSHVEEKDGEERTQASNMVNLSYKAEDTAKSDDSEHDLIENKDSKERTRSSDMINLSDKAEINVANDDGTQVHKENQDAPDSEILKGNKESTQTNLEKESYKGEISATNEDNAETTTTNKYIEDINFEDKDKEKDIRNSELDTKNKDTEYDNLKETINTSKVQNSILQHYINADWIQQSSQSWVERCQNAHSAESVELLKEELFDSILWNVVNTLGDALLQPTISSVWKTWKHDVMKLFSTFPSLSSCKDRQQQIPDGSYQLSLQAGRKRPKLEVRRADTHASQVEMKGSSHSITLETDPGFFKNQDRLSSLAAETSKQAYFREVPIEFDSPDSLSDKWNKIVAEAVDPKILHTDGMESTPMNEMPGKKIVESGSKNQQCIAYIEAKGRQCVRLSIDDDVYCCVHSRYLGSLAKTEKPVSVDTPICDGTTVLGTRCKHHALPGFSFCKKHQPHAETGQTSNLTHNTLKRKHEENYYGSEGLFCKDLVLVNVGSPLQVVPVSVIGSDSFHGQSNLHHKPIHCGNGQNAMEALHCIGSPPYNDNDRCLEAPNWYSLYCEMHLPSWLKRAKNGKSRIISKEVFTELLRDCYSWEQKLHLHKACELFYGLFKSILAPRNQAPKEDLFQAALAEASKDTSVEEMFTKLVHSEKESLKLIWGFNDDTDASLSVEGLLLLPSTTNDNFDDENAIKCKICFAQFPDDQTLGNHWMENHKKEAQWLFRGYACAICLDSFTNKKLLETHVQERHRVQFVEQCLLLQCIPCGSHFGNIEELWLHVLSVHPVEFKRSKAPEKQILPTIEEEPPKQPEQGNSASLENNYENPGSTRKFVCRFCGLKFDLLPDLGRHHQAAHMGRNLVTNRPAKKKVHYYSHRLKSGRLGRPRFKNGLAAASYRISKANVNLEKSIETIKSLDKGEKTLHSQGAETENTVILEEYQCSAVAKVLFSEMHKTKPRPNNLDILSIARSACCKVSLKASLEEKYGILPEKLYLKAAKLCSEHDILVNWHQDGFICSKGCKVLKDQTFPLVSLSNGYPRPKSVSLPHPTTEELEVDEFHYIINSNQLKFGSSQKGVVLCGDLSFKKESIPIICVVDEEILNSQMQGVNEKDRNPFRPWESFTYITKPMLDPSLNLTSESLQLGCACSVSTCSPERCDHVYLFDTDYDDAKDIFGKPMRTRFPYDENGRIILEEGYLVYECNRMCRCNKTCPNRILQNGVRVKLEVFKTEKKGWAVRAGEAIIRGTFVCEYIGEVLDEQEAHIRRKRYDKENCCYLYDISAHVNDMSRLIKEQAKYVIDSTRYGNVSRFINNSCSPNLVSHQVLVESMDSELAHIGLYASRDIALGEELTFNYHYELVPGEGTPCLCGSLNCRGRLF* 1774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1042 1773 MobiDBLite consensus disorder prediction 1194 1220 - -
Lan5g1042 1773 MobiDBLite consensus disorder prediction 399 418 - -
Lan5g1042 1773 ProSiteProfiles Zinc finger C2H2 type domain profile. 1126 1149 IPR013087 -
Lan5g1042 1773 MobiDBLite consensus disorder prediction 345 459 - -
Lan5g1042 1773 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 565 1772 - -
Lan5g1042 1773 Pfam TRAF-type zinc finger 217 275 IPR001293 GO:0008270
Lan5g1042 1773 SMART PostSET_3 1757 1773 IPR003616 -
Lan5g1042 1773 MobiDBLite consensus disorder prediction 503 523 - -
Lan5g1042 1773 ProSiteProfiles Post-SET domain profile. 1757 1773 IPR003616 -
Lan5g1042 1773 SMART set_7 1618 1756 IPR001214 GO:0005515
Lan5g1042 1773 MobiDBLite consensus disorder prediction 355 378 - -
Lan5g1042 1773 Pfam SET domain 1629 1749 IPR001214 GO:0005515
Lan5g1042 1773 ProSitePatterns Zinc finger C2H2 type domain signature. 1094 1115 IPR013087 -
Lan5g1042 1773 Pfam Zinc finger C2H2-type, 3 repeats 1128 1254 IPR040689 -
Lan5g1042 1773 ProSitePatterns Zinc finger C2H2 type domain signature. 1128 1149 IPR013087 -
Lan5g1042 1773 Gene3D SET domain 1456 1754 IPR046341 -
Lan5g1042 1773 SMART preset_2 1476 1602 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lan5g1042 1773 ProSiteProfiles Pre-SET domain profile. 1539 1615 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lan5g1042 1773 ProSiteProfiles SET domain profile. 1618 1750 IPR001214 GO:0005515
Lan5g1042 1773 SUPERFAMILY SET domain 1469 1763 IPR046341 -
Lan5g1042 1773 ProSitePatterns Zinc finger C2H2 type domain signature. 1162 1183 IPR013087 -
Lan5g1042 1773 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 216 281 IPR013083 -
Lan5g1042 1773 MobiDBLite consensus disorder prediction 471 523 - -
Lan5g1042 1773 Gene3D Classic Zinc Finger 1079 1152 - -
Lan5g1042 1773 ProSitePatterns Zinc finger C2H2 type domain signature. 1232 1253 IPR013087 -
Lan5g1042 1773 ProSiteProfiles Zinc finger TRAF-type profile. 212 264 IPR001293 GO:0008270
Lan5g1042 1773 MobiDBLite consensus disorder prediction 476 490 - -
Lan5g1042 1773 Pfam Pre-SET motif 1482 1610 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lan5g1042 1773 SMART c2h2final6 1230 1253 IPR013087 -
Lan5g1042 1773 SMART c2h2final6 1126 1149 IPR013087 -
Lan5g1042 1773 SMART c2h2final6 1092 1115 IPR013087 -
Lan5g1042 1773 SMART c2h2final6 1160 1183 IPR013087 -
Lan5g1042 1773 MobiDBLite consensus disorder prediction 431 459 - -
Lan5g1042 1773 ProSiteProfiles Zinc finger C2H2 type domain profile. 1230 1258 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1042 Lan-Chr5 23701195 23724291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g1042 551 1772 C2H2 Transcription Factor Family AT2G23740 46.800 0.0 1048
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lan5g1042 Pre-SET 3.1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1042 - - lang:109347097 3623.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g1042 5 23701195 23724291 Lan5g1042 5 23701195 23724291 ECH
Lan9g0344 9 5252579 5256861 Lan5g1042 5 23701195 23724291 LSH
Lan5g1042 5 23701195 23724291 Lan9g0344 9 5252579 5256861 PCT
Lan9g0344 9 5252579 5256861 Lan5g1042 5 23701195 23724291 PCT