Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1040 ATGGGCGCCAATTCGTTACCTTCAGAGTCTTCTCACGATCTAGACGAACAGATCTCGCAGCTCATGCAATGCAAACCACTCTCCGAACAACAGGTTAAAGTTTTATGTGAGAAGGCTAAGGAGATTTTAACGGATGAGAGTAATGTCCAGCCTGTGAAAAGCCCTGTGACAATTTGTGGCGATATTCATGGGCAGTTTCATGATCTTGCTGAACTGTTTCGAATTGGAGGAAAGTGTCCAGACACTAACTACTTGTTTATGGGTGATTATGTGGACCGGGGTTATTATTCAGTTGAGACCGTGACACTCCTTGTGGCACTGAAAGTGCGGTATCATCAGCGAATTACTATTCTTAGAGGAAACCATGAAAGCCGTCAGATTACCCAAGTATACGGATTTTACGATGAATGCCTAAGAAAGTATGGTAGTGCTAATGTCTGGAAGATCTTTACTGACCTTTTTGATTTTTTTCCATTGACTGCATTGGTTGAATCTGAAATATTCTGTTTGCATGGTGGACTGTCCCCTTCAATTGAGACCCTTGATAACATAAGGAACTTTGATCGTGTTCAAGAGGTTCCTCATGAAGGGCCCATGTGTGATCTGTTGTGGTCTGACCCAGATGACAGATGTGGCTGGGGAATTTCTCCTCGTGGTGCTGGGTACACTTTTGGCCAGGATATATCTGAACAATTCAATCACACAAATGGTCTTAAGTTGATTGCTAGAGCTCATCAGCTGGTTATGGATGGATTTAACTGGGCTCATGAACAAAAGGTGGTTACCATTTTTAGTGCACCTAACTATTGTTACCGGTGTGGGAACATGGCTTCCATATTGGAAGTTGATGATTGCATGAACCACACATTTATCCAGTTCGAACCTGCTCCAAGGAGAGGAGAACCTGACGTGACACGAAGAACGCCGGATTACTTCCTCTAA 942 0.4342 MGANSLPSESSHDLDEQISQLMQCKPLSEQQVKVLCEKAKEILTDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYHQRITILRGNHESRQITQVYGFYDECLRKYGSANVWKIFTDLFDFFPLTALVESEIFCLHGGLSPSIETLDNIRNFDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHTNGLKLIARAHQLVMDGFNWAHEQKVVTIFSAPNYCYRCGNMASILEVDDCMNHTFIQFEPAPRRGEPDVTRRTPDYFL* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1040 313 CDD MPP_PP2A_PP4_PP6 13 297 - -
Lan5g1040 313 Gene3D - 7 313 IPR029052 -
Lan5g1040 313 SUPERFAMILY Metallo-dependent phosphatases 10 298 IPR029052 -
Lan5g1040 313 PRINTS Serine/threonine phosphatase family signature 55 82 IPR006186 GO:0016787
Lan5g1040 313 PRINTS Serine/threonine phosphatase family signature 84 111 IPR006186 GO:0016787
Lan5g1040 313 PRINTS Serine/threonine phosphatase family signature 117 141 IPR006186 GO:0016787
Lan5g1040 313 PRINTS Serine/threonine phosphatase family signature 152 178 IPR006186 GO:0016787
Lan5g1040 313 PRINTS Serine/threonine phosphatase family signature 181 208 IPR006186 GO:0016787
Lan5g1040 313 PRINTS Serine/threonine phosphatase family signature 237 257 IPR006186 GO:0016787
Lan5g1040 313 PRINTS Serine/threonine phosphatase family signature 259 275 IPR006186 GO:0016787
Lan5g1040 313 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 1 313 - -
Lan5g1040 313 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-4 CATALYTIC SUBUNIT 1 313 - -
Lan5g1040 313 SMART pp2a_7 27 297 IPR006186 GO:0016787
Lan5g1040 313 Pfam Calcineurin-like phosphoesterase 55 246 IPR004843 GO:0016787
Lan5g1040 313 ProSitePatterns Serine/threonine specific protein phosphatases signature. 118 123 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1040 Lan-Chr5 23676818 23684111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g1040 19 243 Calmodulin-binding Proteins AT5G63870 34.082 4.97e-31 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1040 K04382 - ath:AT3G58500 633.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0343 9 5243572 5249222 Lan5g1040 5 23676818 23684111 LSH
Lan5g1040 5 23676818 23684111 Lan19g0324 19 3923967 3929719 LSH