Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1031 ATGGATAACCAAACACCTCAACTTTTACTTGGATCCACTCAAAACGACGTCGACTCAATTCAATTCAACCAACACATTCAAGGAATCATGGCTCCGGAAAACGCCACCTCCTTCACCGCGCTTCTCGAACTTCCTCCGACTCAGGCCGTCGAGCTTCTCCACTCGCCGGAATCCTCCGCCGCCGCTGCTAGGAAACCGCCTGTTATTAACCACAAACCCTACCTCGTCCACGGGAATCACTTGACCTTTCCGTCAAACTCTGAGTTGATCGAACGCGCTGCGAAGTTCTCCGTGTTCGCCGGAGAGAACGCGTCGTCGTCGCCGGAGGAGGCGTGTTTGGTGGTTCCAGTTAGTTCTGGTGATAAGGTGAAGAACGAACCACAAGAGACCGATTCGAATCCTTGCTCCACGCAAGGGTGCGTTTCGGAGCATGCTGTTGAGAACAAGAATCAGAGGAATGCGAAGAGGAAGGAACGAGAGAAGAAGGTTAAAGTGTCGTTGAAGAAGAGTAAGAGCGCCGCCGATGAAAACTCCGGTGACGGCGAGAAGCTACCGTACGTTCATGTTCGAGTTCGTCGAGGTCAAGCTACAGATAGCCATAGCTTAGCAGAAAGGGCTAGGAGAGAGAAAATCAATGCTAGGATGAAGCTTTTACAAGAGCTGGTCCCCGGTTGCAACAAGATATCAGGAACAGCATTGGTTCTCGATGAAATCATCAATCATGTGCAAAATCTACAACGTCAAGTGGAGTTCTTATCAATGAAACTAGCAGCAGTTAACCCAAGAATTGATTTCAGCATAGACAGCTTATTGGCTGCTGATGGTGCATCTCTAATGGACAGCAACTTACCTAGCATGGTTACACCTCTGATGTGGCCCGAAATCCCTGAAAATGGTAACAGACAGCATTATCAGCAGCAGTGGCAATATGATGCATTCCACCAACCACTTTGGGGAAGGGAAGAAGATAACCATAATTTCATGACTCCGGAAAACTCACTTTTGAGTTATGACTCATCGGCAAATTCAGCATCTCTGCACTCAAATCAATTGAAGATGGAGCTCTAA 1068 0.4803 MDNQTPQLLLGSTQNDVDSIQFNQHIQGIMAPENATSFTALLELPPTQAVELLHSPESSAAAARKPPVINHKPYLVHGNHLTFPSNSELIERAAKFSVFAGENASSSPEEACLVVPVSSGDKVKNEPQETDSNPCSTQGCVSEHAVENKNQRNAKRKEREKKVKVSLKKSKSAADENSGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQNLQRQVEFLSMKLAAVNPRIDFSIDSLLAADGASLMDSNLPSMVTPLMWPEIPENGNRQHYQQQWQYDAFHQPLWGREEDNHNFMTPENSLLSYDSSANSASLHSNQLKMEL* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1031 355 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 14 355 IPR024097 GO:0006355
Lan5g1031 355 Gene3D - 192 264 IPR036638 GO:0046983
Lan5g1031 355 MobiDBLite consensus disorder prediction 129 147 - -
Lan5g1031 355 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 14 355 - -
Lan5g1031 355 SMART finulus 201 251 IPR011598 GO:0046983
Lan5g1031 355 MobiDBLite consensus disorder prediction 165 183 - -
Lan5g1031 355 Pfam Helix-loop-helix DNA-binding domain 199 246 IPR011598 GO:0046983
Lan5g1031 355 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 193 264 IPR036638 GO:0046983
Lan5g1031 355 Coils Coil 235 255 - -
Lan5g1031 355 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 195 245 IPR011598 GO:0046983
Lan5g1031 355 MobiDBLite consensus disorder prediction 122 183 - -
Lan5g1031 355 CDD bHLH_AtBPE_like 185 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1031 Lan-Chr5 23577307 23583009 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g1031 21 355 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 53.571 6.66e-103 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan5g1031 HLH 2.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1031 - - lang:109334778 545.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g1031 5 23577307 23583009 Lan5g1031 5 23577307 23583009 ECH
Lan9g0338 9 5203530 5209672 Lan5g1031 5 23577307 23583009 LSH
Lan5g1031 5 23577307 23583009 Lan19g0303 19 3362756 3368976 LSH