Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1027 ATGGCTACTACATTCTGTATATACCTCATTTTCCTTCTCTCATTGACCTTCACAATCTTCAATCTCAGTTCATCTTCTTCACCATCACAAACTGATATTCTTCTCTCATTCAAAGCCTCAATCCAAGACTCTAACAATGCATTATCAACATGGTCAAATACTTCATCAAACCACTATTGTAACTGGAATGGAATCTCATGCTCAACTACAAAACCATTCTCAGTAACTTCTATTAGCCTTCAAAGTTTAAACCTTTCTGGTGATATATCATCTTCTATATGTGACTTAACAAAACTTTCTTACCTCAACCTTGCTGATAATAGTTTCAATGAACCTATTCCACTTCACCTTTCAAAGTGTAGTTTTTTGGAAACTTTGAATCTAAGTAACAATCTTATATGGGGTACTATCCCTTCTCAGATTTCTGAGTTTGGTTCTTTGAGAGTACTTGACTTAAGTAGAAACCATATTGAAGGAAACATCCCTGAAAGCTTTGGTACTTTGAAGAATCTTGAAGTCCTTAACATTGGAAGTAACTTGCTTTCAGGTAATGTACCTACTATTTTTGGAAACTTAACTAAGCTTGAAGTGCTTGATTTGTCTCAAAATCCTTACTTGGTGAGTGAGATTCCTGAGGATATTGGTGAACTTGGAAGGTTAAAGCAACTTTTGTTGCAAAGTTCTTCTTTTCAAGGTGAGATTCCAGGTTCATTGGTGGGTTTATATAGTTTGACTCATTTGGATCTCTCTGAGAATAATCTTACTGGTTTTGTTCCTAAGTCACTAGCTTATTCTCTTAAGAACCTAGTTTCCTTTGATGTTTCACAGAACAAGCTTTCAGGGCCATTTCCAAATGGCATTTGTAAAGGCCTTATTATAAATCTCAGCCTTCACACAAATATCTTCACAGGTTCATTACCAAACAGTACTATCAGTGAATGTATGAGTCTTGAGAGATTCCAAGTTCAGAACAATGGTTTCTATGGAGATTTTCCTATTGAGCTTTTTTCATTGCCTAAAATCAAGCTCATTAGAGCTGAAAACAATAGATTCTCTGGTCAAATACCTGAGTCAATATCAAAAGCTGTTTTGTTAGAGCAAGTTCAGCTTGACAATAACAGCTTTTCTGGTAAAATCCCTATAGGTCTTGGCTTTGTCAAGAGCTTATACAGATTCTCAGCTTCTCTCAATAATTTCTATGGTGAACTTCCTCCAAATTTCTGTGACTCACCAGTTATGAGCATAATGAACCTCTCTCACAATTCACTTTCTGGTCAAATTCCACAGCTGAAAAAATGCAGGAAACTAGTATCATTGTCTTTGGCTGATAATAGTATAATTGGAGAAATACCAACTTCACTTGCTGAGTTACCAGTGCTAACTTACCTTGATCTTTCAGATAACAATCTCACAGGTTCAATCCCTCAAAGGCTTCAAAACTTGAAACTTGCACTTTTCAATGTTTCATTCAATGAGCTTTCTGGTAAGGTACCATACTCCTTGATTTCAGGTCTACCTGCCTCATTTTTGGAGGGTAACCCTGGTCTTTGTGGTCCTGGCTTACCAAAATTATGTTCTGATGATGATATGCCAAGACATCATAATGGTGGTGTTACAACCTTAACATGTGTGTTGATCTCTTTTGCCTTTGTTGTTGGAACTGCTTTTGTTGTTGGTGGATTTGTATTGTATAGGAGATCTTGCAAGGGGAATGATAATGGAGTTGGTGTGTGGCGCTCGGTGTTCTTCTATCCTCTAAGAATTAGTGAGAATGATTTGCTTATAGGGATGAATGAGAAAAGCTCATTAGGGAAAGGTGGAGTTTTCGGTAAAGTTTATGTTGTGAGTTTGCCTAGTGGTGAACTAGTAGTTGTGAAGAAGTTAGTTAATTTTCGAAACCAGTCTTCGAAGAGTTTGAAAGCCGAGGTGAAGACTTTGGCAAAAATTAGGCATAAGAACATTGTTAAAATTCTGGGGTTCTGCCATTCTGATGAATCGGTTTTTCTCATTTACGAGTACTTGAATGAAGGAAGCTTAGGGGATTTGATTTCAAGTCAGAGTTTTCCGTTGCCGTGGGGAGTTAGATTGAGGATTGCTATTGGAGTTGCTCAAGGACTAGCTTATCTTCACAGGGATTATGTCCCACACTTGCTTCATAGAAATGTCAAGTCCAACAACATTCTGTTGGATGCAAACTTCGAGCCGAAACTCACTGATTTCGCTCTTGATAGAGTTTTGGGAGAAGCTGCTTTTCACTCAACTCTGGATTCTGAAGGAGCATCCTCATGTTACAATCCACCAGAATATGGTTACAGTAAGAAACCAACAGAACAATTGGATGTATACAGCTTTGGTGTTGTATTGCTAGAGCTAGTGAGTGGAAGGAAAGCAGAGGCAACAGAAGAAAGTGATGACTCCATTGACATAGTAAAATGGGTTAGAAGGAAAGTGAACCTTACTAATGGGGTGCAACAAGTTCTTGACCCTACAATATCACATACTTGTCACCAAGCAATGGTTGGAGCTCTAGATATAGCTCTTAGTTGCACTTCTGTGGTGCCTGAGAAAAGACCAACATTGGTAGAAGTTGTTAGAGGTCTTCAGTCCTTTGAGTCAAGGGCGCAGGATCTAAATGAAGAACACTCCATTCCTGTCTGA 2658 0.3815 MATTFCIYLIFLLSLTFTIFNLSSSSSPSQTDILLSFKASIQDSNNALSTWSNTSSNHYCNWNGISCSTTKPFSVTSISLQSLNLSGDISSSICDLTKLSYLNLADNSFNEPIPLHLSKCSFLETLNLSNNLIWGTIPSQISEFGSLRVLDLSRNHIEGNIPESFGTLKNLEVLNIGSNLLSGNVPTIFGNLTKLEVLDLSQNPYLVSEIPEDIGELGRLKQLLLQSSSFQGEIPGSLVGLYSLTHLDLSENNLTGFVPKSLAYSLKNLVSFDVSQNKLSGPFPNGICKGLIINLSLHTNIFTGSLPNSTISECMSLERFQVQNNGFYGDFPIELFSLPKIKLIRAENNRFSGQIPESISKAVLLEQVQLDNNSFSGKIPIGLGFVKSLYRFSASLNNFYGELPPNFCDSPVMSIMNLSHNSLSGQIPQLKKCRKLVSLSLADNSIIGEIPTSLAELPVLTYLDLSDNNLTGSIPQRLQNLKLALFNVSFNELSGKVPYSLISGLPASFLEGNPGLCGPGLPKLCSDDDMPRHHNGGVTTLTCVLISFAFVVGTAFVVGGFVLYRRSCKGNDNGVGVWRSVFFYPLRISENDLLIGMNEKSSLGKGGVFGKVYVVSLPSGELVVVKKLVNFRNQSSKSLKAEVKTLAKIRHKNIVKILGFCHSDESVFLIYEYLNEGSLGDLISSQSFPLPWGVRLRIAIGVAQGLAYLHRDYVPHLLHRNVKSNNILLDANFEPKLTDFALDRVLGEAAFHSTLDSEGASSCYNPPEYGYSKKPTEQLDVYSFGVVLLELVSGRKAEATEESDDSIDIVKWVRRKVNLTNGVQQVLDPTISHTCHQAMVGALDIALSCTSVVPEKRPTLVEVVRGLQSFESRAQDLNEEHSIPV* 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1027 885 Gene3D Transferase(Phosphotransferase) domain 1 674 883 - -
Lan5g1027 885 Pfam Protein kinase domain 599 864 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan5g1027 885 PANTHER OSJNBB0022F23.6 PROTEIN 9 874 - -
Lan5g1027 885 Pfam Leucine rich repeat 219 279 IPR001611 GO:0005515
Lan5g1027 885 Pfam Leucine rich repeat 146 204 IPR001611 GO:0005515
Lan5g1027 885 SUPERFAMILY Protein kinase-like (PK-like) 602 866 IPR011009 -
Lan5g1027 885 SUPERFAMILY L domain-like 292 522 - -
Lan5g1027 885 Pfam Leucine Rich Repeat 460 481 IPR001611 GO:0005515
Lan5g1027 885 Pfam Leucine rich repeat N-terminal domain 28 68 IPR013210 -
Lan5g1027 885 Gene3D Ribonuclease Inhibitor 28 185 IPR032675 -
Lan5g1027 885 Gene3D Ribonuclease Inhibitor 186 291 IPR032675 -
Lan5g1027 885 ProSiteProfiles Leucine-rich repeat profile. 459 482 IPR001611 GO:0005515
Lan5g1027 885 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 9 874 - -
Lan5g1027 885 SUPERFAMILY L domain-like 26 288 - -
Lan5g1027 885 SMART LRR_typ_2 241 264 IPR003591 -
Lan5g1027 885 SMART LRR_typ_2 192 217 IPR003591 -
Lan5g1027 885 SMART LRR_typ_2 96 120 IPR003591 -
Lan5g1027 885 SMART LRR_typ_2 266 290 IPR003591 -
Lan5g1027 885 SMART LRR_typ_2 168 191 IPR003591 -
Lan5g1027 885 SMART LRR_typ_2 457 480 IPR003591 -
Lan5g1027 885 SMART LRR_typ_2 144 167 IPR003591 -
Lan5g1027 885 ProSiteProfiles Protein kinase domain profile. 598 871 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan5g1027 885 PRINTS Leucine-rich repeat signature 244 257 - -
Lan5g1027 885 PRINTS Leucine-rich repeat signature 457 470 - -
Lan5g1027 885 ProSiteProfiles Leucine-rich repeat profile. 146 168 IPR001611 GO:0005515
Lan5g1027 885 Gene3D Phosphorylase Kinase; domain 1 592 673 - -
Lan5g1027 885 Gene3D Ribonuclease Inhibitor 292 534 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1027 Lan-Chr5 23553256 23556357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g1027 34 868 Receptor kinase-like Gene Family AT5G06940 63.170 0.0 1018
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lan5g1027 Pkinase 5.2e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1027 - - gmx:100794428 1379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0336 9 5188277 5190882 Lan5g1027 5 23553256 23556357 LSH
Lan5g1027 5 23553256 23556357 Lan19g0301 19 3308461 3312261 LSH