Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1025 ATGGCACCGAAGAAAAGAGCTAGGGTTTCCGACGACGAACAAATTGAAGAAGATACTCAACAACAAAAGAGCCTCTATGAGGTTCTTGGTGTGGAGAAAACAGCCTCTCAACAGGAAATAAAGAAGGCATACCACAAGTTGGCATTGCGGCTCCATCCTGATAAGAACCCGGACGATGAGCAAGCTAAAGAGAAATTCCAGCAACTGCAAAAGGTGATATCGATTCTTGGGGATGAAGAGAAACGAGAACTTTATGACCAGACTGGTTGTGTTGATGACGATGACCTTGCTGGAGATGTTGTTCATAATCTTCATAAGTTTTTCAGAACAATGTACAAGAAGATTACTGAAGCTGATATTGAGGAGTTTGAAGCAAACTATAGAGGATCAGACTCAGAGAAAACTGATTTGATTGATCTTTACAAGAAGTACAAGGGTAACATGGACAGGCTTTTCTGTTCCATGCTTTGTTCAGACTGTAAACTTGACTCGCACCGATTCAAGGATATTCTTGACGAGGCTATAGCTGCTGGAGAAATAAAGGAAAGAAAAGCCTACAAGAAATGGGCAAAGGAGGTATCTGAAACCAAACCACCAACAAGTCCTTTAAGGAGGAGGAAGCCAAAGTCGAACAAGAAGCCAGATACTGATCTGTATGCAATCATTTCACAACGCCGAGATGAGAGGAAAGGCCGGTTTGATTCAATGTTCTCATCTCTAATCTCAAAATATGGTGGAAGTGATATGCCAGAACCCTCTGAGGAGGAATTCGAAGCTGCACAGAGAAAGCTAGAGAGCGGAAGATCCTCCAAAAAATCAAAGAAATCAAAGCATAAGTAA 840 0.4179 MAPKKRARVSDDEQIEEDTQQQKSLYEVLGVEKTASQQEIKKAYHKLALRLHPDKNPDDEQAKEKFQQLQKVISILGDEEKRELYDQTGCVDDDDLAGDVVHNLHKFFRTMYKKITEADIEEFEANYRGSDSEKTDLIDLYKKYKGNMDRLFCSMLCSDCKLDSHRFKDILDEAIAAGEIKERKAYKKWAKEVSETKPPTSPLRRRKPKSNKKPDTDLYAIISQRRDERKGRFDSMFSSLISKYGGSDMPEPSEEEFEAAQRKLESGRSSKKSKKSKHK* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1025 279 PRINTS DnaJ domain signature 26 44 IPR001623 -
Lan5g1025 279 PRINTS DnaJ domain signature 44 59 IPR001623 -
Lan5g1025 279 PRINTS DnaJ domain signature 61 81 IPR001623 -
Lan5g1025 279 PRINTS DnaJ domain signature 81 100 IPR001623 -
Lan5g1025 279 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN-RELATED 4 275 IPR042977 -
Lan5g1025 279 MobiDBLite consensus disorder prediction 1 20 - -
Lan5g1025 279 MobiDBLite consensus disorder prediction 244 279 - -
Lan5g1025 279 Pfam DnaJ domain 25 86 IPR001623 -
Lan5g1025 279 CDD DnaJ 26 78 IPR001623 -
Lan5g1025 279 PANTHER CHAPERONE DNAJ DOMAIN PROTEIN 4 275 - -
Lan5g1025 279 Gene3D DnaJ domain 8 99 IPR036869 -
Lan5g1025 279 MobiDBLite consensus disorder prediction 210 230 - -
Lan5g1025 279 SUPERFAMILY Chaperone J-domain 22 99 IPR036869 -
Lan5g1025 279 MobiDBLite consensus disorder prediction 1 21 - -
Lan5g1025 279 MobiDBLite consensus disorder prediction 189 230 - -
Lan5g1025 279 ProSiteProfiles dnaJ domain profile. 24 89 IPR001623 -
Lan5g1025 279 SMART dnaj_3 23 81 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1025 Lan-Chr5 23538627 23541947 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g1025 26 86 C2H2 Transcription Factor Family AT1G74250 39.394 1.28e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1025 K09529 - gmx:100781463 434.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g1025 5 23538627 23541947 Lan5g1025 5 23538627 23541947 ECH
Lan5g1025 5 23538627 23541947 Lan19g0299 19 3292609 3294887 LSH