Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1024 ATGGAGACAGATAATAATAACAGTGATACAAGGTCCAAAAAGATTGAAGATTATGAAGTGATTGAGCAAATTGGTAGAGGAGCATTTGGTGCTGCATTTTTGGTTCTTCACAAGTCTGAGAAAAAGAGGTATGTGTTGAAAAAGATTCGCTTGGCTAAGCAAACAGAGAAGTTCAAAAGGGCAGCACACCAAGAGATAAACCTGCTTGCAAAACTAAAAAATCCTTACATCGTGGAGTACAAAGATGCTTGGGTGGAGAAAGAGGACCATATATGCATTATAATCGGCTATTGTGAAGGAGGGGACATGGCAGAGAATATAAAGAAAGCTCGGGGATCATTATTTCCCGAACAGAAGGTTTGCAAATGGCTGACTCAATTGTTGATAGCTGTGGACTACTTGCACTCTAATCGTGTAATCCACCGAGATCTTAAGTGTTCCAACATATTCCTCACCAAAGACAAGAATATTCGGCTTGGTGACTTTGGTCTTGCAAAGCGACTGCATACCAAAGACCTTACTTCCTCGGTTGTTGGAACTCCAAACTACATGTGCCCTGAGCTCCTTGCTGACATACCATATGGTTATAAATCTGATATGTGGTCACTTGGTTGCTGCTTGTTTGAGATTGCTGCACATCAACCTGCATTTCGTGCTCCGGACATGGCTGGACTTATCAATAAAATAAACAGATCCTCCATTTCTCCGCTGCCAATTGTTTATTCTTCCACACTTAAACAAATTATCAAGAGCATGCTGAGGAAAAATCCAGAACATAGACCAACAGCAGCTGAATTGTTAAGGCATCCTCATTTACAACCCTACGTTCTTCGCTGTCAAAATGCATCATCTAATGTTCTTCCAGTATATCCCTTGGTTAACTCAAAGGATAAAACAAGATCACCTCATAAATCTAGTGGCAGCAACGACCATGAGGATAGAGAAGCTGGATTAGTAAATCGTTCGGATCGGGTTCATCCAATTGAGGGAAATGGAGATGTACAGCCAAGCAATGTTGCTAATGATGGTGAGCTAACAGTTTTAACCAGTGCAGACGACAACCTTGAGACCAAGACCGTTTATCTTAGCAGCTACATAGTGGAATCTACTACGAGTACCAGTGGCTCGAAAGATGGGTCAACAACATCTGAATCTACTATCTGCAGTGTGTGCAAGGACACAGACTTTAAAAGTAGACCTGCGAGGGAAACGGCGGATGACAAGATCACTTCGAATAGTACACAAGATTCTGTGCATGAGGAACAAGGACTTGCTGTTGAACATTTTCAGAAATTAGAAGTGATTGACATAAATGCAGTGACTGCAGAAGTTGAAGATTATTTTTCCAATGTAGGTTTTGATAATGTTGAAGCTCATAAGGAAGAAGCCGAACTCGAGGACTCTGGGAAATCAGCAATGTCCAGTGCAGGCAGTAGCAGCACTGATAAAGATAAGCTCATTGATACCGCCTCCATTGATAAAGATAAGTCCACTGATGAGGAAAGTTCATTACTGATTATGCATCCTAGTAGAGCTGAAAATGAAACTAAATCTGAAAACTGCTTTAAGAAAAGTGAAAATGCCGAAGCGTTCACAGAAGTCTTACATATGAACTGCTTGCCATCGGAAAACAATGACACACTTCCAGTTAAGGATGAAGCCAAAGAAAAAACACACATCACTACTTGCCCCACGCGTGAAAAAGATGATAGTGCCGTTATGGTTGAGCAGAAGCCGAGTGGCGTTTCGTTGAGTACAATTACTACAACCAAGAATGCATTGGATAATCCCTTGCAGCAAAGAGCTGATGCTTTGGAATCTCTGCTTGAGTTATGTGCTCAGCTACTTAAGCAAGATAAACTTGAAGAGCTTGCTGGTGTGCTAAGACCATTTGGAAAAGAAGCTGTCTCTTCCAGAGAAACAGCAATATGGCTGACAAAGAGCCTCTTATCTGCTCAAAAGTTTAATCCTGAAAACTAG 1980 0.4131 METDNNNSDTRSKKIEDYEVIEQIGRGAFGAAFLVLHKSEKKRYVLKKIRLAKQTEKFKRAAHQEINLLAKLKNPYIVEYKDAWVEKEDHICIIIGYCEGGDMAENIKKARGSLFPEQKVCKWLTQLLIAVDYLHSNRVIHRDLKCSNIFLTKDKNIRLGDFGLAKRLHTKDLTSSVVGTPNYMCPELLADIPYGYKSDMWSLGCCLFEIAAHQPAFRAPDMAGLINKINRSSISPLPIVYSSTLKQIIKSMLRKNPEHRPTAAELLRHPHLQPYVLRCQNASSNVLPVYPLVNSKDKTRSPHKSSGSNDHEDREAGLVNRSDRVHPIEGNGDVQPSNVANDGELTVLTSADDNLETKTVYLSSYIVESTTSTSGSKDGSTTSESTICSVCKDTDFKSRPARETADDKITSNSTQDSVHEEQGLAVEHFQKLEVIDINAVTAEVEDYFSNVGFDNVEAHKEEAELEDSGKSAMSSAGSSSTDKDKLIDTASIDKDKSTDEESSLLIMHPSRAENETKSENCFKKSENAEAFTEVLHMNCLPSENNDTLPVKDEAKEKTHITTCPTREKDDSAVMVEQKPSGVSLSTITTTKNALDNPLQQRADALESLLELCAQLLKQDKLEELAGVLRPFGKEAVSSRETAIWLTKSLLSAQKFNPEN* 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1024 659 MobiDBLite consensus disorder prediction 471 485 - -
Lan5g1024 659 SUPERFAMILY Protein kinase-like (PK-like) 15 309 IPR011009 -
Lan5g1024 659 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524
Lan5g1024 659 SMART serkin_6 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan5g1024 659 CDD STKc_Nek 17 272 - -
Lan5g1024 659 MobiDBLite consensus disorder prediction 486 501 - -
Lan5g1024 659 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Lan5g1024 659 Pfam Protein kinase domain 18 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan5g1024 659 MobiDBLite consensus disorder prediction 297 328 - -
Lan5g1024 659 ProSiteProfiles Protein kinase domain profile. 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan5g1024 659 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 13 489 - -
Lan5g1024 659 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 501 642 - -
Lan5g1024 659 MobiDBLite consensus disorder prediction 460 501 - -
Lan5g1024 659 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 13 489 - -
Lan5g1024 659 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 501 642 - -
Lan5g1024 659 Gene3D Transferase(Phosphotransferase) domain 1 98 286 - -
Lan5g1024 659 Gene3D Phosphorylase Kinase; domain 1 1 97 - -
Lan5g1024 659 MobiDBLite consensus disorder prediction 399 421 - -
Lan5g1024 659 MobiDBLite consensus disorder prediction 293 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1024 Lan-Chr5 23530566 23536578 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g1024 11 273 MAP Kinase Kinase Kinase AT3G13530 32.453 9.46e-37 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Lan5g1024 Pkinase 7.7e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1024 K08857 - gmx:100793379 973.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g1024 5 23530566 23536578 Lan5g1024 5 23530566 23536578 ECH
Lan5g1024 5 23530566 23536578 Lan19g0298 19 3284139 3290462 LSH