Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1023 ATGGCTGATCCTTACTCTAATTTTCTCTCTTCTTCTTCTTCTCCTTTCTTCCATTTCAACCATTTCTCTTCTTCTTCTCCAAACCCTTCTCAACACCACCACCACCACCATCATCATCATCCATATCTTCATAACTTCATCAACCCAACAAAAAATGACACCACCACCACCTTTTTCCACTTCCACCACCACCAAACTCAAGCTACTAACCCTCCTTCACCTCCTCTTAGAGAAGAACTTCCTCTCTTAACTCTTAGCCCAGCAAAGAAAAAAGAGAATAACAATATTCTTAATGAGCAACAAGAGGAGGAAAACCATCTCTCTTGCACTGCCATGGATGTAGAAGAGAGGATCTACCTTTACAAAGAACAACAACAACAACAACAACATGATGATAACACTGTCACTGTTGCACTACACATAGGTTTACCAAACCCTAGTGCTTCTGAGATGGCAACTATGCTTTCCTTTAATAATTCTTCTTCTTCAGAGATCAATGATAAAGACCATGGTAGTGAGGATTCTTCTATCTTCATGCTTAACAATAGGCTCAACAAGGGACAGTACTGGATCCCTACCCCTTCTCAAATTCTCATTGGTCCTACTCAGTTCTCTTGTCCTGTTTGCTGCAAAAGTTTCAACAGATACAATAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCTGAATCTCTGAGGGGTACCCAACCAACAGGAATGTTAAGGCTTCCATGTTATTGTTGTGCACCAGGTTGCAGAAACAACATTGATCATCCAAGAGCAAAGCCATTAAAAGATTTTAGAACACTTCAAACACATTACAAAAGGAAGCATGGGATTAAGCCCTTCATGTGTAGAAAATGTGGCAAGGCCTTTGCAGTGAGGGGAGATTGGAGAACACATGAAAAGAATTGTGGGAAGCTTTGGTATTGTATCTGTGGCTCTGATTTCAAGCATAAGAGATCACTTAAAGATCATATAAAAGCTTTTGGAAGTGGCCATGCAGCTTATGGGATTGATGGCTTTGAAGAAGAAGATGAACCTGCTTCTGAAGTAGAACAAGATAATGATGATTCCACCACCCAGTAA 1104 0.4076 MADPYSNFLSSSSSPFFHFNHFSSSSPNPSQHHHHHHHHHPYLHNFINPTKNDTTTTFFHFHHHQTQATNPPSPPLREELPLLTLSPAKKKENNNILNEQQEEENHLSCTAMDVEERIYLYKEQQQQQQHDDNTVTVALHIGLPNPSASEMATMLSFNNSSSSEINDKDHGSEDSSIFMLNNRLNKGQYWIPTPSQILIGPTQFSCPVCCKSFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEDEPASEVEQDNDDSTTQ* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1023 367 ProSiteProfiles Zinc finger C2H2 type domain profile. 204 231 IPR013087 -
Lan5g1023 367 SMART c2h2final6 288 308 IPR013087 -
Lan5g1023 367 SMART c2h2final6 204 226 IPR013087 -
Lan5g1023 367 PANTHER ZINC FINGER PROTEIN WIP2 1 363 IPR043584 GO:0003700|GO:0010468
Lan5g1023 367 MobiDBLite consensus disorder prediction 348 367 - -
Lan5g1023 367 MobiDBLite consensus disorder prediction 24 45 - -
Lan5g1023 367 ProSitePatterns Zinc finger C2H2 type domain signature. 206 226 IPR013087 -
Lan5g1023 367 Gene3D Classic Zinc Finger 266 341 - -
Lan5g1023 367 SUPERFAMILY beta-beta-alpha zinc fingers 270 308 IPR036236 -
Lan5g1023 367 Gene3D Classic Zinc Finger 203 226 - -
Lan5g1023 367 ProSiteProfiles Zinc finger C2H2 type domain profile. 288 308 IPR013087 -
Lan5g1023 367 MobiDBLite consensus disorder prediction 30 44 - -
Lan5g1023 367 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 1 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1023 Lan-Chr5 23507312 23510363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g1023 1 367 C2H2 Transcription Factor Family AT3G57670 60.553 1.06e-145 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan5g1023 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1023 - - gmx:100813583 504.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g1023 5 23507312 23510363 Lan5g1023 5 23507312 23510363 ECH
Lan9g0333 9 5135842 5138968 Lan5g1023 5 23507312 23510363 LSH
Lan5g1023 5 23507312 23510363 Lan19g0296 19 3240528 3243385 LSH