Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1019 ATGAATCACTTGAGTATTGATACTGGAGATTCCTTCGCAAGCTTGCTTGAGCTTGCGGCCAATAACGATGTTGAAGGTTTCAAACGATTGATTGAGTGTGATCCTTCCTCAGTAGATGAGGTTGGGCTTTGGTATGGTCGTCGGAAGGGATCAAAACAGATGATCAATGAGCACAGAACTCCTTTGATGGTTGCTGCTACTTATGGGAGTATTGAAATTATGAAGATGATTCTTTCACTATCTGATGCAGACATTAACCGCTCTTGTGGACTCGACAAGAGCACTGCCCTTCACTGTGCAGCATCTGGTGGGGCTGAAGATGCTGTTGATTCTGTGAAACTGCTTCTGGCAGCCGGCGCTGATCCGAATTCGGTGGATGCCAATGGACATCGTCCGGTGGATGTTATTGTTTTCCCTCCGAAGCTTGAGTGTGTCAAAAACAGTCTTGAACAGCTTCTTCAAACTGATGATTCTATTGCAGGCTGCAATCTTAGGGTGATCACAACCTCCTCATTCAATTCATATTCTCCACCATTATCAAATTCACCAGAGAATGGATCTCCTTCTGCATCAGATTTCCAATTGAAGATGAAGCCAAAAGATGCGCCTGTTTCTTCTGCATCTGAGAAGAAAGAATATCCTATTGATCCTTCTCTTCCAGATATCAAGAACAGCATATACTCAACTGATGAATTCCGAATGTATTCTTTCAAGGTTCGGCCTTGTTCTCGTGCTTATTCGCATGATTGGACTGAATGCCCTTTTGTCCATCCTGGGGAGAATGCTCGTAGAAGGGATCCAAGAAAGTACCATTACAGCTGTGTACCTTGTCCCGATTTCCGCAAGGGTGCTTGCCGTCGTGGAGACATGTGTGAATATGCTCACGGGGTTTTTGAGTGTTGGCTGCATCCAGCACAATATCGAACTCGCCTCTGCAAGGATGGGATAAATTGTTCCAGAAGAGTTTGTTTCTTTGCGCACACTGCTGAAGAGCTTCGACCGTTATATATTTCAACTGGTTCTGCTGTTCCCTCACCTCGCTCAAGTACATCATCGGCCATGGATTTCGCTGCTGCAATGAGCATGTTGCCAGGCTCTCCTTCCTCAATGTCAGTCATGTCGCCTTCACCATTCACTCCACCTATGTCACCTTCCGCTAATGGCATGCACTCTTCTGTTCCATGGCCTCAGCCGAATGTCCCAGCCTTGCATCTTCCGGGAAGTAATCTTCAGTCCAGTCGTTTGAGATCTTCACTCCATGCTAGAGATATTCCTATGGATGACTTTGACTTGTTCTCTGATTATGATCAGCAACATCTCCTTAATGAGTTATCTTGCCTATCTCCACAGCATCCTATGAATTCTAATAATCTGAACCGCTCAGGTCGGATGAAACCCCTGACTCCTTCAAATCTCGATGACCTCTTTTCTGCTGAGAGTTCTTCTCCTCGATTTGCTGATGGATCACTGGCTTCAAATGTTTTCTCTCCAACTCACAAATCAGCTGTCTTTAATCAATTTCAGCAGCAGCAAAACATGTTATCACCTGTGAACACCAATTTTTCTCCTAAAAATGTTGAACATCCTTTGTTTCAGGCTGCCTCTTTCGGGGCTCAGTCATCAGGAAGAATGTCACCGCGAAACATGGAACCTATTTCTCCAATGAACTCTAGGATGTCTATGCTAGCACAACGTGAGAAGCAGCAACAATTTCGCAGCCTTAGCTCCCGGGAACTAGGCTCCAACTCTGCTGCTGCCGCTGCTGCCTCAGCCAACTCCTGGTCTCGATGGGGTTCCCCAAATGGTAGGGCGGATTGGGCAGCTGGTATAGACGACTTCAATAAGCACCGAAGGTCATCTTCATTTGAGCTGGGGAACAACGGTGAGGAGCCGGATTTATCATGGGTGCAGTCACTTGTCAAAGAATCTCCAACCGATATCAAAGATAAGTTAGCCACTAATGTGCCTAATGTTGAAGCAGCTGGATCCTCCGGTGAGGGGTCAAACATAAACACATCACAAAAGGAGTCTGTCGATCATGCCGTATTGGGAGCTTGGCTCGAACAGATGCAGCTTGATCATCTCGTGGCTCAGCAAAACTGA 2103 0.4612 MNHLSIDTGDSFASLLELAANNDVEGFKRLIECDPSSVDEVGLWYGRRKGSKQMINEHRTPLMVAATYGSIEIMKMILSLSDADINRSCGLDKSTALHCAASGGAEDAVDSVKLLLAAGADPNSVDANGHRPVDVIVFPPKLECVKNSLEQLLQTDDSIAGCNLRVITTSSFNSYSPPLSNSPENGSPSASDFQLKMKPKDAPVSSASEKKEYPIDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGINCSRRVCFFAHTAEELRPLYISTGSAVPSPRSSTSSAMDFAAAMSMLPGSPSSMSVMSPSPFTPPMSPSANGMHSSVPWPQPNVPALHLPGSNLQSSRLRSSLHARDIPMDDFDLFSDYDQQHLLNELSCLSPQHPMNSNNLNRSGRMKPLTPSNLDDLFSAESSSPRFADGSLASNVFSPTHKSAVFNQFQQQQNMLSPVNTNFSPKNVEHPLFQAASFGAQSSGRMSPRNMEPISPMNSRMSMLAQREKQQQFRSLSSRELGSNSAAAAAASANSWSRWGSPNGRADWAAGIDDFNKHRRSSSFELGNNGEEPDLSWVQSLVKESPTDIKDKLATNVPNVEAAGSSGEGSNINTSQKESVDHAVLGAWLEQMQLDHLVAQQN* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1019 700 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 1 697 - -
Lan5g1019 700 SMART c3hfinal6 306 329 IPR000571 GO:0046872
Lan5g1019 700 SMART c3hfinal6 271 297 IPR000571 GO:0046872
Lan5g1019 700 Gene3D - 272 334 - -
Lan5g1019 700 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Lan5g1019 700 SUPERFAMILY Ankyrin repeat 16 146 IPR036770 -
Lan5g1019 700 Pfam Ankyrin repeats (3 copies) 18 126 IPR002110 GO:0005515
Lan5g1019 700 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 276 296 IPR000571 GO:0046872
Lan5g1019 700 MobiDBLite consensus disorder prediction 175 216 - -
Lan5g1019 700 ProSiteProfiles Zinc finger C3H1-type profile. 276 298 IPR000571 GO:0046872
Lan5g1019 700 PANTHER UNKEMPT FAMILY MEMBER 1 697 IPR045234 -
Lan5g1019 700 SMART ANK_2a 92 124 IPR002110 GO:0005515
Lan5g1019 700 SMART ANK_2a 10 40 IPR002110 GO:0005515
Lan5g1019 700 SMART ANK_2a 57 87 IPR002110 GO:0005515
Lan5g1019 700 MobiDBLite consensus disorder prediction 175 192 - -
Lan5g1019 700 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Lan5g1019 700 Gene3D - 11 147 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1019 Lan-Chr5 23470897 23474827 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g1019 11 693 C2H2 Transcription Factor Family AT5G12850 52.991 0.0 671
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan5g1019 Ank_2 1.5e-10 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1019 - - ccaj:109796653 1134.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g1019 5 23470897 23474827 Lan5g1019 5 23470897 23474827 ECH