Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1017 ATGAATCACTTGAGTATTGATACTGGAGATTCCTTCGCAAGCTTGCTTGAGCTTGCGGCCAATAACGATGTTGAAGGTTTCAAACGATTGATTGAGTGTGATCCTTCCTCAGTAGATGAGGTTGGGCTTTGGTATGGTCGTCGGAAGGGATCAAAACAGATGATCAATGAGCACAGAACTCCTTTGATGGTTGCTGCTACTTATGGGAGTATTGAAATTATGAAGATGATTCTTTCACTATCTGATGCAGACATTAACCGCTCTTGTGGACTCGACAAGAGCACTGCCCTTCACTGTGCAGCATCTGGTGGGGCTGAAGATGCTGTTGATTCTGTGAAACTGCTTCTGGCAGCCGGCGCTGATCCGAATTCGGTGGATGCCAATGGACATCGTCCGGTGGATGTTATTGTTTTCCCTCCGAAGCTTGAGTGTGTCAAAAACAGTCTTGAACAGCTTCTTCAAACTGATGATTCTATTGCAGGCTGCAATCTTAGGGTGATCACAACCTCCTCATTCAATTCATATTCTCCACCATTATCAAATTCACCAGAGAATGGATCTCCTTCTGCATCAGATTTCCAATTGAAGATGAAGCCAAAAGATGCGCCTGTTTCTTCTGCATCTGAGAAGAAAGAATATCCTATTGATCCTTCTCTTCCAGATATCAAGAACAGCATATACTCAACTGATGAATTCCGAATGTATTCTTTCAAGGTCCGGCCTTGTTCTCGTGCTTATTCGCATGATTGGACTGAATGCCCTTTCGTCCATCCAGGAGAGAATGCTCGTAGAAGGGACCCAAGAAAATACCATTACAGCTGTGTACCTTGTCCTGATTTTCGCAAGGGTGCTTGCCGGCGCGGGGACATGTGTGAATATGCTCATGGTGTTTTTGAGTGCTGGTTGCATCCTGCACAATATCGTACCCGTCTTTGCAAGGATGGGATAAATTGCTCCAGAAGAGTGTGTTTCTTTGCGCACACCGCTGAAGAGCTTCGACCATTATATGTTTCAACTGGTTCTGCTGTCCTCTCGCCTCACGCGAGCACATCCGCTGCCATGGACTTTGCTGCCGCCTTGAGCATGTTGCCAGGCTCTCCATCCTCAATGTCCATCATGTCACCTTCACCATTCACTCCACCTATGTCACCTTCCGCTAATGGCATGCACTCTTCTGTTCCATGGCCTCAGCCGAATGTCCCAGCCTTGCATCTTCCGGGAAGTAATCTTCAGTCCAGTCGTTTGAGATCTTCACTCCATGCTAGAGATATTCCTATGGATGACTTTGACTTGTTCTCTGATTATGATCAGCAACATCTCCTTAATGAGTTATCTTGCCTATCTCCACAGCATCCTATGAATTCTAATAATCTGAACCGCTCAGGTCGGATGAAACCCCTGACTCCTTCAAATCTCGATGACCTCTTTTCTGCTGAGAGTTCTTCTCCTCGATTTGCTGATGGATCACTGGCTTCAAATGTTTTCTCTCCAACTCACAAATCAGCTGTCTTTAATCAATTTCAGCAGCAGCAAAACATGTTATCACCTGTGAACACCAATTTTTCTCCTAAAAATGTTGAACATCCTTTGTTTCAGGCTGCCTCTTTCGGGGCTCAGTCATCAGGAAGAATGTCACCGCGAAACATGGAACCTATTTCTCCAATGAACTCTAGGATGTCTATGCTAGCACAACGTGAGAAGCAGCAACAATTTCGCAGCCTTAGCTCCCGGGAACTAGGCTCCAACTCTGCTGCTGCCGCTGCTGCCTCAGCCAACTCCTGGTCTCGATGGGGTTCCCCAAATGGTAGGGCGGATTGGGCAGCTGGTATAGACGACTTCAATAAGCACCGAAGGTCATCTTCATTTGAGCTGGGGAACAACGGTGAGGAGCCGGATTTATCATGGGTGCAGTCACTTGTCAAAGAATCTCCAACCGATATCAAAGATAAGTTAGCCACTAATGTGCCTAATGTTGAAGCAGCTGGATCCTCCGGTGAGGGGTCAAACATAAACACATCACAAAAGGAGTCTGTCGATCATGCCGTATTGGGAGCTTGGCTCGAACAGATGCAGCTTGATCATCTCGTGGCTCAGCAAAACTGA 2103 0.4646 MNHLSIDTGDSFASLLELAANNDVEGFKRLIECDPSSVDEVGLWYGRRKGSKQMINEHRTPLMVAATYGSIEIMKMILSLSDADINRSCGLDKSTALHCAASGGAEDAVDSVKLLLAAGADPNSVDANGHRPVDVIVFPPKLECVKNSLEQLLQTDDSIAGCNLRVITTSSFNSYSPPLSNSPENGSPSASDFQLKMKPKDAPVSSASEKKEYPIDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGINCSRRVCFFAHTAEELRPLYVSTGSAVLSPHASTSAAMDFAAALSMLPGSPSSMSIMSPSPFTPPMSPSANGMHSSVPWPQPNVPALHLPGSNLQSSRLRSSLHARDIPMDDFDLFSDYDQQHLLNELSCLSPQHPMNSNNLNRSGRMKPLTPSNLDDLFSAESSSPRFADGSLASNVFSPTHKSAVFNQFQQQQNMLSPVNTNFSPKNVEHPLFQAASFGAQSSGRMSPRNMEPISPMNSRMSMLAQREKQQQFRSLSSRELGSNSAAAAAASANSWSRWGSPNGRADWAAGIDDFNKHRRSSSFELGNNGEEPDLSWVQSLVKESPTDIKDKLATNVPNVEAAGSSGEGSNINTSQKESVDHAVLGAWLEQMQLDHLVAQQN* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1017 700 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 1 697 - -
Lan5g1017 700 SMART c3hfinal6 306 329 IPR000571 GO:0046872
Lan5g1017 700 SMART c3hfinal6 271 297 IPR000571 GO:0046872
Lan5g1017 700 Gene3D - 272 334 - -
Lan5g1017 700 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Lan5g1017 700 SUPERFAMILY Ankyrin repeat 16 146 IPR036770 -
Lan5g1017 700 Pfam Ankyrin repeats (3 copies) 18 126 IPR002110 GO:0005515
Lan5g1017 700 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 276 296 IPR000571 GO:0046872
Lan5g1017 700 MobiDBLite consensus disorder prediction 175 216 - -
Lan5g1017 700 ProSiteProfiles Zinc finger C3H1-type profile. 276 298 IPR000571 GO:0046872
Lan5g1017 700 PANTHER UNKEMPT FAMILY MEMBER 1 697 IPR045234 -
Lan5g1017 700 SMART ANK_2a 92 124 IPR002110 GO:0005515
Lan5g1017 700 SMART ANK_2a 10 40 IPR002110 GO:0005515
Lan5g1017 700 SMART ANK_2a 57 87 IPR002110 GO:0005515
Lan5g1017 700 MobiDBLite consensus disorder prediction 175 192 - -
Lan5g1017 700 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Lan5g1017 700 Gene3D - 11 147 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g1017 Lan-Chr5 23461900 23465829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g1017 11 693 C2H2 Transcription Factor Family AT5G12850 52.849 0.0 666
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan5g1017 Ank_2 1.5e-10 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1017 - - ccaj:109796653 1139.79