Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g1012 ATGGGGACTCCTGAATTTCCAGATTTAGGGAAACATTGTTCTCTTCCTCATTGCAAACTCATCGATTTCTTACCCTTCACTTGCGATCGTTGCAACCAAGTATATTGTTTGGATCACCGAAGTTATACCAATCATCAGTGTACAAAAGGCAACAAACAAGATGTCACTGTTGTTATATGTCCTCTTTGTGCCAAAAGTGTTCGCCTAATTCCAGATCAAGATCCGAACATAACTTGGGAGCATCATGTTAACACTGACTGTGACCCATCGAATTTCGAGAAAGTCACAAAGAAGAAAAGATGCCCTGCCACAGGATGCAGAGAGATCTTAGTATTCTCAAACACAATCAAATGCAGGGACTGCATGGTAGACCATTGTTTGAAGCACCGGTTTGGACCTGATCACAAATGTCCTGGACCCAAAAAGTCGGAATCAAGCTTTTCTTTTACGAATCCTTTTAATAGAAGTGCAAATGAGGAGTCAAAACCCAATTCAACCCCAGCCGCATCTTCTAAATGGACTTCAAGTCTTCTTAACATGGCTTCTAACATTCGAGCTTCAGCAGAACAAGCCTGGCAGACAGCAATAGATGGGGTGGGACAGAGCAGCGGCAGTGGAAACAGAAACGATCAATTGGAGCAGTGCCCTCAGTGTGGTGCAAAGTTTTCGTCGGTCACTACTTTGGTGGATCATGTGCAGAAGGTTCATGAAAGGAATGGAAATCGATCAAAGGTAAAGAAGGTGCCTGTTGCAGCATGTCCTAAGTGTAGTAGAGGATTTGTAGACCCAGTGGCCCTTGTTGAGCATGTTGAAAGGGATCACGGTGGTAGTTCTAGATAG 840 0.4381 MGTPEFPDLGKHCSLPHCKLIDFLPFTCDRCNQVYCLDHRSYTNHQCTKGNKQDVTVVICPLCAKSVRLIPDQDPNITWEHHVNTDCDPSNFEKVTKKKRCPATGCREILVFSNTIKCRDCMVDHCLKHRFGPDHKCPGPKKSESSFSFTNPFNRSANEESKPNSTPAASSKWTSSLLNMASNIRASAEQAWQTAIDGVGQSSGSGNRNDQLEQCPQCGAKFSSVTTLVDHVQKVHERNGNRSKVKKVPVAACPKCSRGFVDPVALVEHVERDHGGSSR* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g1012 279 ProSitePatterns Zinc finger C2H2 type domain signature. 215 236 IPR013087 -
Lan5g1012 279 PANTHER ZINC FINGER AN1 AND C2H2 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 13 1 279 - -
Lan5g1012 279 SMART c2h2final6 213 236 IPR013087 -
Lan5g1012 279 SMART c2h2final6 251 274 IPR013087 -
Lan5g1012 279 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Lan5g1012 279 Pfam AN1-like Zinc finger 13 50 IPR000058 GO:0008270
Lan5g1012 279 SUPERFAMILY AN1-like Zinc finger 93 151 IPR035896 -
Lan5g1012 279 SUPERFAMILY AN1-like Zinc finger 6 51 IPR035896 -
Lan5g1012 279 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Lan5g1012 279 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Lan5g1012 279 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Lan5g1012 279 ProSitePatterns Zinc finger C2H2 type domain signature. 253 274 IPR013087 -
Lan5g1012 279 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Lan5g1012 279 Gene3D Classic Zinc Finger 182 278 - -
Lan5g1012 279 Pfam C2H2-type zinc finger 214 236 - -
Lan5g1012 279 ProSiteProfiles Zinc finger C2H2 type domain profile. 213 241 IPR013087 -
Lan5g1012 279 ProSiteProfiles Zinc finger C2H2 type domain profile. 251 279 IPR013087 -
Lan5g1012 279 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 1 279 - -
Lan5g1012 279 MobiDBLite consensus disorder prediction 148 171 - -
Lan5g1012 279 Gene3D - 86 164 IPR035896 -
Lan5g1012 279 Gene3D - 2 58 IPR035896 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g1012 1 279 C2H2 Transcription Factor Family AT2G41835 60.498 4.88e-113 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan5g1012 zf-AN1 1.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g1012 - - gmx:100806459 467.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g1012 5 23404163 23406255 Lan5g1012 5 23404163 23406255 ECH