Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0997 ATGGCTTCTTCTTCTTCTGATCCTAGCAAGTCCGAAATTGGCGGCGGTGCGGCGGAGACATCGGAGGCGGCGGCGCTGGCGGTTGCGGTGATGAACGATCAGGCGTTACTGTATAGAGGATTGAAGAAAGCGAAGAAAGAGAGAGGTTGTACTGCGAAAGAGAGAATCAGCAAAATGCCTCCTTGTGCAGCTGGAAAACGTAGCTCCATATACCGTGGTGTTACCAGGCATAGATGGACTGGTCGTTATGAAGCACATCTTTGGGATAAAAGTACATGGAACCAAAATCAGAATAAAAAAGGAAAGCAAGTTTACTTGGGGGCATATGATGATGAGGAAGCAGCAGCTAGGGCATATGACCTTGCTGCTCTGAAATATTGGGGTCCAGGGACTCTCATTAATTTCCCTGTGACTGATTATACAAGAGATCTTGAAGAAATGCAGAATGTCTCAAGAGAGGAATACCTTGCATCTTTACGGCGGAAGAGCAGTGGCTTTTCAAGAGGAATATCAAAATACCGTGCACTCTCCAGTCGATGGGAGCCATCATATGGTCGTATTGCTGGATCTGATTTCTTCAATAGTATGCATTATGGTTACGATTCCGTTGCAGAAAGTGAATATGCAAGTGGTGTTTGCATAGAAAGAAAGATCGATTTAACAAGTCACATCAAGTGGTGGGGATCTAATAAAAGTCGACAACCTGATGCTGGAACAAGATTATCAGAAGAAAAGAAACATGGTTTTGCTGGAGATGTTTGCAGCGAACTTAAAATGTTGGAACAGAAAGTCCAACAGACTGAACCATACCAGATGCCAGAGTTAGGCAGGTCCCACAATGAGAAAAAACATAGGAGTTCTTCAGTCTCTGCCTTAAGTATCTTATCACAGTCTGCTGCCTATAAGAGCTTGCAAGAGAAAGCATCAAAGAGACAGGAAAATAACACTGATAATGATGAGAATGAAAACAAAAACACAGTCAATAAGTTGGATCATGGCAAGGCAGTTGAGAAATCATCAAACCACGATGGTGGCAGTGATCGTGTTGACATTGAAATTGAAACAACTGGGGCATTGTCTCTTCAAAGAAATATCTACCCACTGACACCATTCTTGTCTGCACCGCTTTTGACAGCATACAATACTGTTGATCCATCATTGGTAGATCCTGTTCTATGGACATCTCTTGTGCCTATGCTTTCTGCTGGCCTTTCTTGTCCTACTCAGGTTACAAAGACTGAGACCAGTTCATCTTACACCATCTTTCAGCCTGAGGAATGA 1281 0.4333 MASSSSDPSKSEIGGGAAETSEAAALAVAVMNDQALLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGAYDDEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREEYLASLRRKSSGFSRGISKYRALSSRWEPSYGRIAGSDFFNSMHYGYDSVAESEYASGVCIERKIDLTSHIKWWGSNKSRQPDAGTRLSEEKKHGFAGDVCSELKMLEQKVQQTEPYQMPELGRSHNEKKHRSSSVSALSILSQSAAYKSLQEKASKRQENNTDNDENENKNTVNKLDHGKAVEKSSNHDGGSDRVDIEIETTGALSLQRNIYPLTPFLSAPLLTAYNTVDPSLVDPVLWTSLVPMLSAGLSCPTQVTKTETSSSYTIFQPEE* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0997 426 ProSiteProfiles AP2/ERF domain profile. 70 136 IPR001471 GO:0003700|GO:0006355
Lan5g0997 426 SUPERFAMILY DNA-binding domain 69 137 IPR016177 GO:0003677
Lan5g0997 426 PRINTS Ethylene responsive element binding protein signature 71 82 IPR001471 GO:0003700|GO:0006355
Lan5g0997 426 PRINTS Ethylene responsive element binding protein signature 118 138 IPR001471 GO:0003700|GO:0006355
Lan5g0997 426 MobiDBLite consensus disorder prediction 303 349 - -
Lan5g0997 426 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 2 420 - -
Lan5g0997 426 MobiDBLite consensus disorder prediction 268 289 - -
Lan5g0997 426 MobiDBLite consensus disorder prediction 306 349 - -
Lan5g0997 426 Gene3D AP2/ERF domain 70 138 IPR036955 GO:0003700|GO:0006355
Lan5g0997 426 PANTHER BNAA03G19580D PROTEIN 2 420 - -
Lan5g0997 426 Pfam AP2 domain 70 128 IPR001471 GO:0003700|GO:0006355
Lan5g0997 426 SMART rav1_2 70 142 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0997 Lan-Chr5 23246276 23250719 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0997 1 424 AP2-EREBP Transcription Factor Family AT2G41710 59.132 9.34e-156 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan5g0997 AP2 1.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0997 K09285 - gmx:100814117 692.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0997 5 23246276 23250719 Lan5g0997 5 23246276 23250719 ECH