Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0991 ATGGATCATAGAACTCTTTTCAATCTCGAGTCTTTGATGAACTTTCAACTTCCAGAACAAGATGATGATTTTGATTATTATGGAAATAGTAGTCAGGATGAGAGCAGAGATAGCCAAGTAGGTAGGACAGATGCAAATCACAGTAATGGGAATATGCATGGAAGGGAGGTGAATTTGCTAAAGAAAAGGAGGTGGTCTCAAAACAGTGACGACGAGGAAACAAACACTTTTAACAGGACACGCATGACAGAGGAGCGATATCGATCAATGCTGGGAGAGCATGTTCTGCAATACAAGAGGAGGGTTAAGGATGCCTCATCTAGTCCTGCCCAAAATCAGGTTTCTGTTCCACTCCTCAAAAGTAATGCTGGCTTAAAAGCCCGCAAGTCTGGGAGTGAGCGCAAGGGAGGATTACATGCTGCAGAAACTACATCTGAATGGATGAATGATTCCAATTCTAAGAAAGTGGGAAATCACCGTGATGCTGATTTCGTGCAGCGATATGGCACTGATAGGACTAACTATGAACCTGCTTCTTTAGATATTGGGGATGGAATCGCTTACAAGATTCCTCCAGTTTATGATAAGTTGGCAGGAATGCTGAACCTTCCAGCCTTCACGGATATCCATGTTGAGGACTCTTATTTAAAGGGTACCTTGGATTTGGGATCCTTGGCTGAAATGATGACATCTGGTAAAAGGTTTGGGAATAGAAACCGAGCAGGCATGGGGGAAACCATATGCCAATATGAATCACTTCAGGCCCGATTGAAGGTCATGTCATCATCTAATTTAGCTCATAAGTTCAGTCTGAAGGTTTCTGATATTGATTTGGATTCATGCATTCCGGAGGGGGCAGCTGGAAGCATAAAGCGATCTATTTTGTCCGAGGGTGGTGTGTTGCAGGTTTATTATGTCAAGGTTTTGGAGAAAGGTGACACCTATGAGATCATTGAACGAAGCCTACCAAAGAAGCAAAAGATAAAGAAAGACCCTGCTTTGATAGAGAAAGAGGAAATGGAAAGGATTGGCAAGATTTGGGTGAATATTGTAAGAAGAGACATACCTAAGCAACATAGGAACTTCACTACTTTTCATCGAAAACAACTCATTGATGCCAAGAGGGTCTCAGAGATCTGTCAGAGAGAGGTTAAAATAAAAATTAGTAGATCGCTTAAGTGGCCAAGGACTGCTGGTATGCGCACCCGGAAACTTGCTAGAGACATGTTGCTGTTCTGGAAAAGAATAGACAAGGAGATGGCAGAAGTGAAGAAGAGAGAGGAGAAAGAAGCTGCTGAAGCTTTGAGGCGTGAACAGGAGCTTCGTGAAGCAAGGAGGCAGCAGCAACGGCTTAATTTTCTTATACAACAAACTGAGTTGTACAGTCACTTTATGCAGAACAAGTCAAACTTACTATCTTCAGAAGGTTTACCCATGGTAGATGAAAACACAAATGATCATGATGCACTGGTTGACTCTTCAAATGCTGGACCTAACGAGGAGGAAGATCCTGAAGAGGCTGAGTTGAAGAAGGAAGCTTTGAAGGCTGCTCAAGAAGCAGTCTCTAAGCAGAGAAGTTTGACAAATGCTTTTGACACTGAATGCTTGAGGCTGCGCCAGGTTGATGAAACTGATACGCCTCCACCAGAAGTTGCTGGAGCAAGTAATATTGATTTGCAAACCCCTTCAACCATGCCAGTGGCATCCACAGTTCAGACACCGGAATTATTTAAAGGTTGTCTCAAAGAATATCAGCTCAAGGGTCTTCAGTGGCTAGTTAATTGTTATGAGCAGGGTTTAAATGGTATACTTGCTGATGAGATGGGACTTGGAAAAACCATTCAGGCTATGGTTTTTTTAGCTCATTTAGCTGAGGAGAAGAACATATGGGGACCTTTTCTGGTTGTTGCACCTGCTTCTGTACTCAACAATTGGAATGAGGAACTTGAGCGCTTCTGCCCTGGACTGAGAAGACTTCCTTATTGGGGTGGGATTTCAGAGCGAACAGTGCTCAGGAAAAGTATTAACCCTAAGGATCTTTACCGTAGGGAAGCTAAATTCCACATTCTCATTACAAGCTACCAGCTATTAGTAACTGATGAGAAGTATTTTCGTCGTGTGAAATGGCAATACATGGTTTTAGATGAAGCCCAAGCAATCAAAAGTGCAAACAGTATAAGATGGAAGACACTCCTCAGCTTTAATTGTCGGAATCGCCTACTATTGACTGGTACACCTGTTCAGAATAATATGGCAGAGTTGTGGGCTCTTCTTCACTTCATTATGCCAACTTTATTTGACAGCCATGAGCAGTTTAATGAGTGGTTTTCAAGAGGAATTGAGAACCATGCAGAACACGGGGGTACTTTGAATGAGCATCAACTTAATAGATTGCATTCAATTCTAAAGCCTTTCATGCTAAGACGTGTTAAAAAAGATGTAGTTTCTGAGCTGACTTCAAAAACTGAGGTTACAGTTCATTGCAAGTTGAGTTCTCGGCAGCAGGCTTTTTATCAAGCAATTAAGAACAAGATATCTCTTGCAGAGCTATTTGATAGTAATCGTGGGCAGCTCAATGAGAAGAGAATTCTGAATTTAATGAACATTGTTATTCAGCTAAGGAAGGTATGCAATCATCCAGAATTGTTTGAGAGAAGTGAGGGAAGCACATATCTTTACTTTGGAAATATTCCAAATTCCCTTCCACCTCCTCCATTTGGGGAGTTGGAGGACGTATATTATTCTGGTGGTCACAACCCCATAACATACAAGATACCAAAACTTGTCTATCAAGAAATTTTGCAAAGTTCTGAAGCTCTCAGTTCAGCTGTTGGTCGTGGTGTCAGCAAAGAATCTTTTCAGAAACATTTTAATATTTTTACACCAGAAGCTGTATATCGATCTGTTTTCTCAGATGATATGTACGTTAAAAGTGGAAACTTTGGTTTTACCCATTTGATGGATTTGTCTCCACAAGAGTTCACATTTCTGGCTACCGGTTCTTTTATGGAGCGACTATTATTTTCTATGATGAGGTGGGAACAAAATCTCCTCGATGAAGTAGTAGAATTTCTCACGGAGACCATAGACGATCCAGAATGTAGTCACCTTGAGCAAGGAAAAGTGAGAACTATCACTCGTATGTTATTGACGCCGCCGAGATCTGAGATTAAGTTGCTACAAAGAAAAATTTCAACTGGCCCTCGCTATGCTCCTTTTGAGGCCTTGGTTGTCTCACATCGGGATAGACTTCTATCAAATGCAAGGCTTCTTCACTCTGCTTACACATATATCCCACGGAGTAGAGCTCCCCCGATTGGTGCTCACTGCCCTGATAGAAACTTCTACTATAAAATGATTGAAGAATTGCATGATCCTTGGGTTAAGAGGTTATTTGTGGGATTTGCACGTACATCTGACTGCAATGGGCCTAGAATGCCAGATTCTCCTCCTCATCATTTAATTGAAGAAATAGATTCTAAACTACCTGTCTCTCATCCTGCTCTTCAGTTGACGCACAGTATTTTTGGGTCCTCTCCAGCTATGCGGAATTTTGACCCAGCAAAGTTGCTCACTGACTCTGGGAAGCTTCAAACACTTGATATATTATTGAAACGCTTGCGGGCAGGAAACCATCGGATTCTCTTATTTGCTCAGATGACTAAGATGCTGAATATTTTGGAGGACTATATGAACTACAGAAAATATAAGTATTTTAGACTTGATGGATCGTCTACTATTCAGGATCGCAGAGACATGGTTAGAGACTTCCAGCATAGGTCTGATATTTTTGTGTTCTTACTGAGTACGAGAGCGGGTGGATTGGGTATCAACTTGACTGCGGCTGACACAGTCATATTTTACGAGAGTGATTGGAATCCAACATTGGATCTACAGGCAATGGACAGAGCTCATCGTTTGGGTCAGACAAAAGATGTTACTGTTTACCGACTTATATGTAAAGATACAGTTGAAGAGAAGATTCTTCTTAGAGCAAGTCAGAAAAGTACTGTACAGAACCTTGTCATGACTGGTGGTTCTGTTGGTGGTGATCTTTTAGCTCCTGAGGATGTTGTATCTTTGCTTCTGGATGATGTTCAGTTACAGAAGAAATTAAAGGAAATTCCTCTTCAGGTAAAGGATAGGCAAAAGAAGAAACAACCTACGAAGGGTATTTGGGTAAATGAAGATGGTGATGCTTCTCTGGAAGATCTAACTAACTCTGTACCCCAGGGTGCTGCAGATCTTGATCTTTCCATGGATCCAGAGGGGTCCAAGTCTAGTAATAATAATAAAAAGAGAAAAGGTGCCTCAGATAAGCAAACATCAAGGTCAAAGAATTCTCAAAAGATGAATGAGCTCAGTAGTATCACGCCAATGGATGGCGAATTGGATGATACCCTCCTAACTTCCGATCCAGTAAGCCGGAAACCCAAGCGATCAAAGAGGGCATAG 4455 0.4162 MDHRTLFNLESLMNFQLPEQDDDFDYYGNSSQDESRDSQVGRTDANHSNGNMHGREVNLLKKRRWSQNSDDEETNTFNRTRMTEERYRSMLGEHVLQYKRRVKDASSSPAQNQVSVPLLKSNAGLKARKSGSERKGGLHAAETTSEWMNDSNSKKVGNHRDADFVQRYGTDRTNYEPASLDIGDGIAYKIPPVYDKLAGMLNLPAFTDIHVEDSYLKGTLDLGSLAEMMTSGKRFGNRNRAGMGETICQYESLQARLKVMSSSNLAHKFSLKVSDIDLDSCIPEGAAGSIKRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKQKIKKDPALIEKEEMERIGKIWVNIVRRDIPKQHRNFTTFHRKQLIDAKRVSEICQREVKIKISRSLKWPRTAGMRTRKLARDMLLFWKRIDKEMAEVKKREEKEAAEALRREQELREARRQQQRLNFLIQQTELYSHFMQNKSNLLSSEGLPMVDENTNDHDALVDSSNAGPNEEEDPEEAELKKEALKAAQEAVSKQRSLTNAFDTECLRLRQVDETDTPPPEVAGASNIDLQTPSTMPVASTVQTPELFKGCLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMVFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPGLRRLPYWGGISERTVLRKSINPKDLYRREAKFHILITSYQLLVTDEKYFRRVKWQYMVLDEAQAIKSANSIRWKTLLSFNCRNRLLLTGTPVQNNMAELWALLHFIMPTLFDSHEQFNEWFSRGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVVSELTSKTEVTVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQLNEKRILNLMNIVIQLRKVCNHPELFERSEGSTYLYFGNIPNSLPPPPFGELEDVYYSGGHNPITYKIPKLVYQEILQSSEALSSAVGRGVSKESFQKHFNIFTPEAVYRSVFSDDMYVKSGNFGFTHLMDLSPQEFTFLATGSFMERLLFSMMRWEQNLLDEVVEFLTETIDDPECSHLEQGKVRTITRMLLTPPRSEIKLLQRKISTGPRYAPFEALVVSHRDRLLSNARLLHSAYTYIPRSRAPPIGAHCPDRNFYYKMIEELHDPWVKRLFVGFARTSDCNGPRMPDSPPHHLIEEIDSKLPVSHPALQLTHSIFGSSPAMRNFDPAKLLTDSGKLQTLDILLKRLRAGNHRILLFAQMTKMLNILEDYMNYRKYKYFRLDGSSTIQDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKDTVEEKILLRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDVQLQKKLKEIPLQVKDRQKKKQPTKGIWVNEDGDASLEDLTNSVPQGAADLDLSMDPEGSKSSNNNKKRKGASDKQTSRSKNSQKMNELSSITPMDGELDDTLLTSDPVSRKPKRSKRA* 1485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0991 1484 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 593 764 IPR014001 -
Lan5g0991 1484 Coils Coil 418 457 - -
Lan5g0991 1484 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 811 1371 IPR027417 -
Lan5g0991 1484 MobiDBLite consensus disorder prediction 125 161 - -
Lan5g0991 1484 PANTHER CHROMATIN-REMODELING ATPASE INO80 7 1451 IPR031047 GO:0005634|GO:0006281|GO:0006338|GO:0006351|GO:0016887|GO:0031011
Lan5g0991 1484 PANTHER HELICASE SRCAP-RELATED 7 1451 - -
Lan5g0991 1484 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1199 1383 IPR001650 -
Lan5g0991 1484 MobiDBLite consensus disorder prediction 476 508 - -
Lan5g0991 1484 ProSiteProfiles DBINO domain profile. 346 471 IPR020838 GO:0003677
Lan5g0991 1484 Gene3D - 554 833 IPR038718 -
Lan5g0991 1484 Pfam DNA-binding domain 341 470 IPR020838 GO:0003677
Lan5g0991 1484 MobiDBLite consensus disorder prediction 23 57 - -
Lan5g0991 1484 Pfam SNF2-related domain 596 883 IPR000330 GO:0005524|GO:0140658
Lan5g0991 1484 Pfam Helicase conserved C-terminal domain 1199 1308 IPR001650 -
Lan5g0991 1484 SMART ultradead3 577 772 IPR014001 -
Lan5g0991 1484 MobiDBLite consensus disorder prediction 1442 1456 - -
Lan5g0991 1484 CDD SF2_C_SNF 1187 1319 - -
Lan5g0991 1484 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 564 809 IPR027417 -
Lan5g0991 1484 SMART helicmild6 1225 1308 IPR001650 -
Lan5g0991 1484 MobiDBLite consensus disorder prediction 1380 1484 - -
Lan5g0991 1484 MobiDBLite consensus disorder prediction 1427 1441 - -
Lan5g0991 1484 MobiDBLite consensus disorder prediction 31 53 - -
Lan5g0991 1484 Gene3D - 1161 1406 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0991 Lan-Chr5 23172651 23184091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0991 634 882 RAD5 or RAD16-like Gene Family AT1G61140 23.871 4.24e-11 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lan5g0991 SNF2_N 3.1e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0991 K11665 - gmx:100780615 2472.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0991 5 23172651 23184091 Lan5g0991 5 23172651 23184091 ECH
Lan9g0303 9 4079941 4091319 Lan5g0991 5 23172651 23184091 LSH