Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0975 ATGCTTGCACTATCTCCTCCTGTGTTATCAAACATGGGAATATGGCCCTTAGAAGTTGAGCCTATAAGTCATAATAATAACCAAAACTACTTCAATTCAGACTATTACTCATTTCCTCATCAATTTTCTTCACCTCATTCACCACTTGAGGTTCAAACATCTACACCATCCTCAGACCCTACCATGGTAAAGAAGCTCAGCCACAATGCTAGCGAACGGGATCGCCGAAAGAAAATCAATAGCTTGTATTCCTCACTTCGTTCACTTCTTCCTGTGCAAGATCAAAAGAAAAAAATGAGCATTCCCGGAACAATTTCACAAGTCCTAAAATACATACCTGAGTTGCAAAAGCAGGTAGAAGGACTAATTAAGAAGAAGGAAGAACTTTTATTAAGAATTTCACGGCAAGGAGATGCAGTGAACAAAAAATGTCAAAGGAAAATTGCTCCTCAGAGTTCTGCTTTTGTAGTTTCAACAACTAGACTCAATGATATTGAGGCTTCTATTCAGATTTCCACTTATGAAGAGGTCAACAAGATTTCACTGTGTGAGATCTTGCTGTGCTTAGAAAATCATGGGCTTGTTCTTCTAAATGCTTCTTCATCTGAAACCTTTGAAGGGAGGATCTTCTATAACTTGCATTATCAAGTGGAAAAAAATTACAGATTAGAGTACGATATTGTAAGTGAGATGCTTTTGTCACTGTTAGAAAAGAAGGAAGGGATTTTCTAG 732 0.3757 MLALSPPVLSNMGIWPLEVEPISHNNNQNYFNSDYYSFPHQFSSPHSPLEVQTSTPSSDPTMVKKLSHNASERDRRKKINSLYSSLRSLLPVQDQKKKMSIPGTISQVLKYIPELQKQVEGLIKKKEELLLRISRQGDAVNKKCQRKIAPQSSAFVVSTTRLNDIEASIQISTYEEVNKISLCEILLCLENHGLVLLNASSSETFEGRIFYNLHYQVEKNYRLEYDIVSEMLLSLLEKKEGIF* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0975 243 PANTHER TRANSCRIPTION FACTOR ORG2-RELATED 1 237 - -
Lan5g0975 243 Pfam Helix-loop-helix DNA-binding domain 64 116 IPR011598 GO:0046983
Lan5g0975 243 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 64 133 IPR036638 GO:0046983
Lan5g0975 243 SMART finulus 69 121 IPR011598 GO:0046983
Lan5g0975 243 MobiDBLite consensus disorder prediction 46 74 - -
Lan5g0975 243 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 237 IPR015660 GO:0003700|GO:0006357
Lan5g0975 243 Coils Coil 112 132 - -
Lan5g0975 243 Gene3D - 57 147 IPR036638 GO:0046983
Lan5g0975 243 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 63 115 IPR011598 GO:0046983
Lan5g0975 243 MobiDBLite consensus disorder prediction 46 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0975 Lan-Chr5 22958546 22961753 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0975 1 243 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 42.520 5.62e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan5g0975 HLH 2.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0975 - - gmx:100803424 259.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0975 5 22958546 22961753 Lan19g0250 19 2766519 2767653 LSH