Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0955 ATGAATCACAAGGCCAATGTTTCCAAAGAGCTCAACGCTAAGCACAAGAAGATATTGGAAGGGCTTCTTAAATTACCAGAGAATAGGGAGTGTGCTGATTGCAAAGCTAAAGGTCCAAGATGGGCTAGCGTAAATCTTGGCATCTTTATATGCATGCAGTGCTCAGGAATTCATCGGAGTTTGGGGGTACATATTTCAAAGGTTCGTTCTGCAACTCTGGACACTTGGCTTCCAGATCAAGTTGCATTCATTCAATCATTGGGAAATGAGAAAGCAAATAGTTATTGGGAAGCAGAATTACCTCCACATTATGATAGAGTTGGAACTGAGAATTTTATTCGTGCGAAGTATGAAGAGAAGAGATGGGTTTCACGGGATGGGAAACCAAAATCACCTTCTAGACTGCAGGAAGAGAAAACCCATTCACATTGGCAAAGGCCTGTGGAAAGAAGTGGTCATGGTTATGTAGCTGCTTCTGAGAATACTTTTGAGGAAAGGAAGAAAATCCAACCATCAAATACAATTTCAGCTACAAGAGTTTGTGTTCCTGCTCCTCCCAAAGGACCTGATCATGCAACTCCTGTTACCAAACCTCAGCATGTTGAGAAAGTGGAACAAGTAGCGCCACAACCACCAGCTGAAACTTCAAATCAGGCTACAGATACTGCTCAAAATACTCCTCCAAAAGTTGACTATGCTGTGGACCTTTTCAACATGTTGTCTATGGATAGCCCTAGTGTAAATGGCTCGCAGGCAGCTGCTGCTACTGCTGATGATAATAACTGGGCTGGTTTTCAGTCTGCTCCAGAGGCATCAACAACTGAGAAGTCTAATCCGATAAAAGTATTTGAGAGTATTCCCCAGTCCGCATCTGGAATTGAGGATCTATTTAAAGATTCACCTTTAGTGACACCAAGTTTAGCACCAGCAAAACCAGATAAAGATGTAAAAAATGATATTATGAGCCTCTTTGAGAAGAGCAATATGGTTTCTCCATTTTCTATGCATCAACAGCAGCTTGCCATGTTAGCACAGCAACAGTCTCTTCTAATGGCTGCTGCAGCTAAATCTACTGTTGGAGATCCCAAGTATACTGCTAATCCACAACAACCTAGATCCAATGTTCCTGGTCAGAGTTGGCCACCTGCGGGATACCCAGTTTCTGGATCAATGCCCATGGTTGGTCAGGGAGATCTGCAGAACCTTATGCAGACTAGGAACATGACTCCAGGACATCCACCACCGAGCTCTGTTTTGTATCCTTCGTCTGGTTTCTATCCTATGGGGCAAGTTGCTCCAGTTAATGGTACGATAACAACGGGAGAGAGTAAACCTCGGTCTGCTCCAGTGTCATCGACCACATTACAATCTGCGAAAGATTATGATTTTTCCTCCTTAACACAAGGGATGTTTGCCAAACAATGA 1425 0.433 MNHKANVSKELNAKHKKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPDQVAFIQSLGNEKANSYWEAELPPHYDRVGTENFIRAKYEEKRWVSRDGKPKSPSRLQEEKTHSHWQRPVERSGHGYVAASENTFEERKKIQPSNTISATRVCVPAPPKGPDHATPVTKPQHVEKVEQVAPQPPAETSNQATDTAQNTPPKVDYAVDLFNMLSMDSPSVNGSQAAAATADDNNWAGFQSAPEASTTEKSNPIKVFESIPQSASGIEDLFKDSPLVTPSLAPAKPDKDVKNDIMSLFEKSNMVSPFSMHQQQLAMLAQQQSLLMAAAAKSTVGDPKYTANPQQPRSNVPGQSWPPAGYPVSGSMPMVGQGDLQNLMQTRNMTPGHPPPSSVLYPSSGFYPMGQVAPVNGTITTGESKPRSAPVSSTTLQSAKDYDFSSLTQGMFAKQ* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0955 474 PANTHER ARF GTPASE ACTIVATOR 1 474 - -
Lan5g0955 474 MobiDBLite consensus disorder prediction 123 148 - -
Lan5g0955 474 CDD ArfGap 19 117 - -
Lan5g0955 474 MobiDBLite consensus disorder prediction 182 228 - -
Lan5g0955 474 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Lan5g0955 474 MobiDBLite consensus disorder prediction 123 149 - -
Lan5g0955 474 MobiDBLite consensus disorder prediction 436 466 - -
Lan5g0955 474 Gene3D Arf GTPase activating protein 1 130 IPR038508 -
Lan5g0955 474 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Lan5g0955 474 Pfam Putative GTPase activating protein for Arf 17 125 IPR001164 GO:0005096
Lan5g0955 474 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Lan5g0955 474 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Lan5g0955 474 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Lan5g0955 474 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 474 IPR044520 GO:0005096
Lan5g0955 474 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Lan5g0955 474 MobiDBLite consensus disorder prediction 210 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0955 Lan-Chr5 22718642 22723556 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0955 2 123 C2H2 Transcription Factor Family AT4G05330 45.385 2.35e-29 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0955 K12486 - gmx:100807561 693.73