Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0942 ATGGGAATTCCAGAGAGGGATCCTCTTTCAGAATTGAGTTTACCACCTGGGTTTAGATTTTATCCAACTGATGAGGAGCTTCTAGTTCAATATCTTTGTAGAAAAGTAGCTGGTCACAATTTTGCTTTACAAATCATTGCTGAAATCGACTTATACAAATTTGACCCTTGGGTTCTTCCAAGTAAAGCAATATTTGGAGAAAAAGAATGGTATTTTTTTAGCCCAAGAGATAGGAAGTACCCAAATGGTTGTAGACCAAATAGAGTTGCTGGGTCTGGGTATTGGAAAGCTACTGGAACAGATAAGATGATAAGCAGTGAAGGTAGAAAAGTTGGTATAAAAAAAGCACTTGTTTTCTATGTTGGAAAAGCACCCAAAGGGACTAAAACAAATTGGATTATGCATGAGTATCGCCTACTTGACTCTTCTAGAAAGAGTGGTAGCACCAAGCTTGACGATTGGGTTCTATGCCGCATATACAAGAAAAACTCAAGTGCACAAAAACCCATCCCAGACCAATACACTCAATACAGCAACGTCTCTTCTTCAAATTCCTCCTCCTCCCACATCGACGGCGTTCTCGAATCGTTACCACAAATCCACGACCGTTGCTTCGCCTTGCCACGTGTCACCGACGAGAAGCCTCTCAACAATTTTCACCAAAATCTCACCGCTGGAACCTTCGTTGATTGGACTAATAACTCGGCGGTTATGAACTCAGTAACCGAGTTTGTTGACTCAGGGAACGAAACAGTGATGAACTATGGAAATGACCTTTGTGTCCCAGCGCTGATGGAGGAAGAAGTTCAAAGCAAAACACAGAGGATTGAGAATTCCGGTTTTTTTCAGCAGGGTGGTTTGAATATGAATGAGTTCTCAAACGGGTTTTTAAATAACGTTGATTTTGATGGGTTTAGGTACCCGGTTCACCCGGTTGGGTTTGGGTTCAGGGAATGA 957 0.419 MGIPERDPLSELSLPPGFRFYPTDEELLVQYLCRKVAGHNFALQIIAEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGCRPNRVAGSGYWKATGTDKMISSEGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRLLDSSRKSGSTKLDDWVLCRIYKKNSSAQKPIPDQYTQYSNVSSSNSSSSHIDGVLESLPQIHDRCFALPRVTDEKPLNNFHQNLTAGTFVDWTNNSAVMNSVTEFVDSGNETVMNYGNDLCVPALMEEEVQSKTQRIENSGFFQQGGLNMNEFSNGFLNNVDFDGFRYPVHPVGFGFRE* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0942 318 PANTHER NAC DOMAIN-CONTAINING PROTEIN 55 1 277 - -
Lan5g0942 318 PANTHER NAC TRANSCRIPTION FACTOR 56 1 277 - -
Lan5g0942 318 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Lan5g0942 318 SUPERFAMILY NAC domain 10 163 IPR036093 GO:0003677|GO:0006355
Lan5g0942 318 Gene3D NAC domain 23 168 IPR036093 GO:0003677|GO:0006355
Lan5g0942 318 ProSiteProfiles NAC domain profile. 14 162 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0942 Lan-Chr5 22568031 22579018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0942 1 316 NAC Transcription Factor Family AT1G52890 56.845 3.78e-115 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lan5g0942 NAM 5.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0942 - - gmx:732651 440.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan19g0191 19 1653121 1655949 Lan5g0942 5 22568031 22579018 LSH