Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0937 ATGACCAAAACGACATTGCTGTACCAAGAAAACGACGACGATGATGACGAGTGTTTCTACGAATCACAAGACCGATTGCTCTCACTTTCTTCTTCGTGTTCTTGTTCAACTTCGAATTCCGATAACGATGACGAAACCAATGATAATTACAATTATGCCCCTCTCACTCTCAACAATTACGATGTTTGGATCTCTCAACCTTCTTCCATTTCCGAACGCCGTAACCGTCTCCTTCGCCATTTAGGTCTCGCCGGCGACGTTTCTCTCTCACGCGGTTACGCCGTTTCCGTCGACAATAATGCTGATATTTCAAGATCAGTTTCGTCCGATCAACTCACCCGTTGTCACCAACCGCCACCGCCGGAGACGGATTCCACCGCCGCCGACTCCTCCTCTGCAATGTTCAGGTCGAAATCCGACAGCGCTGTGGATCGCGAGAATTGTAATATTAAGCGTTGTTCTTGTTCCTCTTGTGGTTTGTGTTCTTCTTCCGCTTCGATTCTTTCTGTAAATAGCCGTGGTATTAATGGCGCTGCCGCCGGCGGTAATGGTTCACCGAATAAGCCTCCTTCCGGGAAGAATTTGAGGAAGGTGGATGAAATTCAAAGCGAATCGAGGAATTTGAGTGTGGATTTGAGTCATGATTTGGAAAATGTGGATGAGAATGAGAAGATGTTGGAGGAGGGAGAGGCGTGTACTATAAGAGATCTTGATAATGGGAAAGAGTTTGTGGTGAAGGAAGTGAGGGAAGATGGTTCGTGGAACAAGGTTAAGGAGGTTGGGACAGGGAAGCAATTGACCATGGAAGAGTTTGAGATGACGGTAGGCCATTCACCGATTGTTCAAGAATTGATGCGGCGCCAGCACGTGGAGGAAGGGAAAGAAGGTGGTTATAACGACAACAAGGACAATGTAGATTCAATTGTGAATGGAGGAGGAATAGGAGGGAGTGGAGGCAGTGTAAGTGGTGGTGGTTCTTTTAAATTGAAGAAGAAAGGGAATTGGTTGAAGAGTATAAGGAGTGTAGCGAGCTCGATGGCGGGGCATGGTAGAGAGAGGAGAAGCAGTGATGAGAGGGATACTTCATCGGAGAAGGGTGGGAGGAGGTCGAGTTCCGCAACCGATGATAGCCAAGATGCTGCATCATTTCATGGACCTGAGAGAGTGAGGGTTAGGCAGTATGGGAAGTCATGTAAAGACCTTACCGGAATTTATAAGACGCAGGAGATTCAGGCTCATAATGGATCTATATGGAGTATTAAGTTTAGTCTGGATGGTAAGTATCTTGCGAGTGCGGGTGAGGATTGCGTGATTCATGTGTGGCAGGTTGTGGAGTCTGAGAGGAAGGGGGAGTTGCTCATGGACAAACCCGAAGATGCGAATGTAAATATGTTGTTTGTCGTCAATGGGTCACCGGATACAACAACCTTGCTGTCCCCTATGAAGGACAACAACCCAGAAAAGAAGAGAAAGGGGAGGTCATCCTTTAGCAGAAAATCATTGAGTTTGGACCAATTAGTGGTGTCGGACACTGTTTTTGCTCTCACAGAAAAACCCGTTTGCTCCTTTCAAGGCCATCTCCATGATGTGCTTGACCTCTCCTGGTCCAAGTCTCAGCACCTGCTCTCATCTTCAATGGACAAAACAGTGCGGCTGTGGCATTTGTCTAGCAAGTCTTGTTTAAAAATATTTTCACACAGTGACTATGTAACTTGCATCCAGTTTAATCCTGTTGATGATAGATACTTCATTAGCGGATCTTTGGATGCTAAGGTTCGCATATGGAGCGTTCCTGATCGACAAGTTGTTGATTGGATTGATCTGCATGAGATGGTCACTGCTGCTTGTTATACACCTGATGGTCAGGGTGCACTAGTTGGTTCGTACAAGGGTAGCTGCCATTTATATAATACATCTGAAAATAAGTTGCAACAGAAAAGTCAGATCAATCTGCAGAACAAGAAAAAGAAATCGCATCAGAAGAAAATTACTGGTTTCCAGTTTGCCCAGGGAAGTTCATCAGAAGTACTTATCACATCTGCTGATTCACGAATTCGGGTTGTTGATGGTGTTGATCTTGTCCATAAGTTTAAAGGATTTCGAAATGCAACTAGCCCGATTTCAGCTTCCCTCGCAGCAAGCGGAAAATATATTGTCTCAGCAAGTGAGGATTCCCATGTATACATCTGGAAAAATGAAGCAGATTGCAGACCCAACAGAAGCAAAGGTGTCACCGTCACTCATTCATATGAACATTTTCACTGTAAAGATGTTTCGGTGGCCATTCCCTGGCCTGGTACGGGTGATACATGGGACATGCATGCTACACTTTCTGTAGAGCAATCTGAGCTCGATCACAACGCTGATGAGGCCTCATCGGCAAATCATCCTCCTACCCCTGTAGAGGAAAACTTTGGTACGGAAGGTTTGCGATCCTCATCAGCTTACAACAGTAGTCCGTGTCACGGGACCATTGCAGGTGCAACAAACAGTTACTTTTTCGATAGAATTTCGGCAACATGGCCAGAGGAAAAACTTCTTCTAGCTGCGAGGAACCGAAGCAGCCCTCGTGTCAGTGTGGATTTCCCAAATGGGGTAAGTCAAAACATGTCAGCCTGGGGTATGGTGATTGTAACTGCTGGCCTTCGAGGTGAAATTAAAACTTTCCAAAATTTTGGATTACCGCTTCGGATATAG 2697 0.4572 MTKTTLLYQENDDDDDECFYESQDRLLSLSSSCSCSTSNSDNDDETNDNYNYAPLTLNNYDVWISQPSSISERRNRLLRHLGLAGDVSLSRGYAVSVDNNADISRSVSSDQLTRCHQPPPPETDSTAADSSSAMFRSKSDSAVDRENCNIKRCSCSSCGLCSSSASILSVNSRGINGAAAGGNGSPNKPPSGKNLRKVDEIQSESRNLSVDLSHDLENVDENEKMLEEGEACTIRDLDNGKEFVVKEVREDGSWNKVKEVGTGKQLTMEEFEMTVGHSPIVQELMRRQHVEEGKEGGYNDNKDNVDSIVNGGGIGGSGGSVSGGGSFKLKKKGNWLKSIRSVASSMAGHGRERRSSDERDTSSEKGGRRSSSATDDSQDAASFHGPERVRVRQYGKSCKDLTGIYKTQEIQAHNGSIWSIKFSLDGKYLASAGEDCVIHVWQVVESERKGELLMDKPEDANVNMLFVVNGSPDTTTLLSPMKDNNPEKKRKGRSSFSRKSLSLDQLVVSDTVFALTEKPVCSFQGHLHDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKSCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSVPDRQVVDWIDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSQINLQNKKKKSHQKKITGFQFAQGSSSEVLITSADSRIRVVDGVDLVHKFKGFRNATSPISASLAASGKYIVSASEDSHVYIWKNEADCRPNRSKGVTVTHSYEHFHCKDVSVAIPWPGTGDTWDMHATLSVEQSELDHNADEASSANHPPTPVEENFGTEGLRSSSAYNSSPCHGTIAGATNSYFFDRISATWPEEKLLLAARNRSSPRVSVDFPNGVSQNMSAWGMVIVTAGLRGEIKTFQNFGLPLRI* 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0937 898 MobiDBLite consensus disorder prediction 792 813 - -
Lan5g0937 898 SMART WD40_4 516 554 IPR001680 GO:0005515
Lan5g0937 898 SMART WD40_4 599 637 IPR001680 GO:0005515
Lan5g0937 898 SMART WD40_4 403 442 IPR001680 GO:0005515
Lan5g0937 898 SMART WD40_4 690 731 IPR001680 GO:0005515
Lan5g0937 898 SMART WD40_4 644 689 IPR001680 GO:0005515
Lan5g0937 898 SMART WD40_4 557 596 IPR001680 GO:0005515
Lan5g0937 898 PANTHER WD REPEAT DOMAIN 44 7 898 IPR040324 -
Lan5g0937 898 Gene3D - 496 758 IPR015943 GO:0005515
Lan5g0937 898 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 410 443 - -
Lan5g0937 898 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 7 898 - -
Lan5g0937 898 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 563 597 - -
Lan5g0937 898 MobiDBLite consensus disorder prediction 783 813 - -
Lan5g0937 898 MobiDBLite consensus disorder prediction 106 138 - -
Lan5g0937 898 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 523 557 - -
Lan5g0937 898 ProSiteProfiles Trp-Asp (WD) repeats profile. 410 451 IPR001680 GO:0005515
Lan5g0937 898 Gene3D - 350 487 IPR015943 GO:0005515
Lan5g0937 898 Pfam WD domain, G-beta repeat 559 596 IPR001680 GO:0005515
Lan5g0937 898 Pfam WD domain, G-beta repeat 518 553 IPR001680 GO:0005515
Lan5g0937 898 Pfam WD domain, G-beta repeat 408 441 IPR001680 GO:0005515
Lan5g0937 898 Pfam WD domain, G-beta repeat 694 731 IPR001680 GO:0005515
Lan5g0937 898 PRINTS G protein beta WD-40 repeat signature 429 443 IPR020472 -
Lan5g0937 898 PRINTS G protein beta WD-40 repeat signature 541 555 IPR020472 -
Lan5g0937 898 PRINTS G protein beta WD-40 repeat signature 583 597 IPR020472 -
Lan5g0937 898 ProSiteProfiles Trp-Asp (WD) repeats profile. 563 597 IPR001680 GO:0005515
Lan5g0937 898 MobiDBLite consensus disorder prediction 350 372 - -
Lan5g0937 898 MobiDBLite consensus disorder prediction 343 388 - -
Lan5g0937 898 ProSiteProfiles Trp-Asp (WD) repeats profile. 523 563 IPR001680 GO:0005515
Lan5g0937 898 MobiDBLite consensus disorder prediction 475 496 - -
Lan5g0937 898 SUPERFAMILY WD40 repeat-like 404 732 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0937 Lan-Chr5 22477290 22483381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0937 510 728 U-box Gene Family AT1G04510 27.615 2.33e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0937 K20241 - jre:109013457 1085.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan19g0187 19 1602977 1608365 Lan5g0937 5 22477290 22483381 LSH