Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0914 ATGGCTCCAAGGGATAGAACAGCCGCCGCTATCACCGTCGCCACAACCCCAAAGACCACCCACCTCGCCGCCGCTAAAGAGATCCGTTATAGAGGAGTTAGGAAGCGACCGTGGGGCCGTTACGCCGCTGAGATCCGGGATCCTGGCAAGAAGACACGTGTCTGGTTAGGAACCTTTGATACTCCTGAGGAGGCGGCGCGTGCTTACGACGCAGCAGCACGCGAGTTCCGTGGCGCAAGAGCGAAGACTAATTTTCCCACCGCTTCAGAGCTTATGAATATAAACGTAAACATTAATAACACCGTTACACGTAGCCCTAGCCAAAGCAGCACCGTTGATTCTTCTTCACCACCGCCGCCGTTGGCACTCACCCTCAGCCCATTCTCCTCCTCCGACAATACACCCTACCCGGTGGCGCGTCCCGTGGTGTTCTTCGACGTTTTTGCTAAACATGTTGGCCGTGAAATTTGTACTATTGATCGCCACGTAGCTGAGTTCCGCCGTGCTTCCACCGTCTCCGCCGCCGTTAAGTGCGAATCTGATTCTTCATCAGTGGTGGATTATGAGCGTGTCCCACGACATAGACTCTTAGATCTTGACCTTAATCTACCTCCACCACCTGAAGTTGCATGA 633 0.5403 MAPRDRTAAAITVATTPKTTHLAAAKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTPEEAARAYDAAAREFRGARAKTNFPTASELMNINVNINNTVTRSPSQSSTVDSSSPPPPLALTLSPFSSSDNTPYPVARPVVFFDVFAKHVGREICTIDRHVAEFRRASTVSAAVKCESDSSSVVDYERVPRHRLLDLDLNLPPPPEVA* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0914 210 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Lan5g0914 210 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Lan5g0914 210 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4 23 200 - -
Lan5g0914 210 Pfam AP2 domain 29 78 IPR001471 GO:0003700|GO:0006355
Lan5g0914 210 MobiDBLite consensus disorder prediction 101 125 - -
Lan5g0914 210 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Lan5g0914 210 Gene3D AP2/ERF domain 28 88 IPR036955 GO:0003700|GO:0006355
Lan5g0914 210 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 23 200 - -
Lan5g0914 210 CDD AP2 29 88 IPR001471 GO:0003700|GO:0006355
Lan5g0914 210 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Lan5g0914 210 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0914 Lan-Chr5 22170929 22171968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0914 25 154 AP2-EREBP Transcription Factor Family AT3G15210 60.417 1.15e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan5g0914 AP2 6.5e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0914 K09286 - gmx:100786709 186.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan19g0159 19 1388227 1389311 Lan5g0914 5 22170929 22171968 LSH