Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0899 ATGGCGAGTATATGCTCATACACCACCATCAGAGGCACCAACAAGGTCGTAAGAGCTGGGGATTGTGTTTTTATGCGTCCTTATGATCATACAAGCAATCTACCGCGTGTAGCACACGTGCAAAAGATTGTGCAAGATGATAAGTACAATGTGCTTGTTTGTGTAAGATTGTATTATAGGCCTCAAGAATCTATTGGTGGACGAAGGCAATTCCATGGAGCAAAAGAGCTTTTTTTGTCGGATCGATTTGATTTTCAGAGTGCTGATACAATGGAAGGGAAGTGTGTTGTGCACTCCCTTAAGAACTATATGAAGCTAGAGAATGTAAGTGCTGAGGATTACTATTGTAGGTTTCAGTACCAGGCTGCTACCGGTGTTTTCTCGCCCGATCGTGTTGCTGTGTATTGCCATTGTGAGATGCCTAAAAACCCGGATGAGTTTATGCTGCAGTGTAAGGAGTGCAAGGATTGGTACCATCCTGCTTGTGTGGACATGACTATTGAAGATGCGAAGAATTTGGACCAATATGTATGTTCCGAATGTTCAACTGACGATGACTTAGAGAATCCGCAGGCTACACTTCCTGAATCGCAAGCATCTGATGGCATGGTGAGACCACCTGCATCCAATACCAAATAA 639 0.4366 MASICSYTTIRGTNKVVRAGDCVFMRPYDHTSNLPRVAHVQKIVQDDKYNVLVCVRLYYRPQESIGGRRQFHGAKELFLSDRFDFQSADTMEGKCVVHSLKNYMKLENVSAEDYYCRFQYQAATGVFSPDRVAVYCHCEMPKNPDEFMLQCKECKDWYHPACVDMTIEDAKNLDQYVCSECSTDDDLENPQATLPESQASDGMVRPPASNTK* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0899 212 SMART BAH_4 15 131 IPR001025 GO:0003682
Lan5g0899 212 Pfam PHD-finger 135 183 IPR019787 -
Lan5g0899 212 ProSiteProfiles Zinc finger PHD-type profile. 133 184 IPR019787 -
Lan5g0899 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 193 IPR013083 -
Lan5g0899 212 MobiDBLite consensus disorder prediction 183 212 - -
Lan5g0899 212 Gene3D - 2 129 IPR043151 -
Lan5g0899 212 SUPERFAMILY FYVE/PHD zinc finger 128 183 IPR011011 -
Lan5g0899 212 PANTHER BNAC03G64850D PROTEIN 8 207 IPR045205 GO:0006325|GO:0035064
Lan5g0899 212 SMART PHD_3 135 182 IPR001965 -
Lan5g0899 212 ProSitePatterns Zinc finger PHD-type signature. 136 181 IPR019786 -
Lan5g0899 212 PANTHER OS08G0421900 PROTEIN 8 207 - -
Lan5g0899 212 Pfam BAH domain 17 130 IPR001025 GO:0003682
Lan5g0899 212 ProSiteProfiles BAH domain profile. 15 131 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0899 Lan-Chr5 22019160 22021199 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lan5g0899 BAH 1.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0899 K25868 - lang:109348121 451.055