Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0897 ATGGCGAAAAAAAAACCACTCTCATACACTACCATCAGAGGCACCAACAAGATCGTAAAAGTTGGGGATTGTGTGTTTATGCGTCCTACTCTTTCCAATGTGAGGAAGCTACCACGTGTGGCGCAAGTGGAAAAGATTGAGCACGATAATAGAAACAATGTTAATGTAAGTATAAGATGGTATTATCGTCCTGAAGAATCTATTGGGGGACGCAGGCAGTTCCATGGAGTAAAGGAACTTCTTTTGTCTGATCAATATGATGTTCAGAGTGCTCACAACATTATAGGGAAGTGTGTTGTGCACTCCTATAACAACGATACTAAGCTTGAGAATATACGTCCTGAGGATTACTATTGGCGATTCGAGTACAAGGCTGCTACAGGCACTTTCATGCCAGATTTTGTTGCTGTGTATTGCAAATGTGAGATGCCTAGAAACCCGGATGACTTCATGGTGCACTGTAAGGGGTGCCAGAATTGGTACCATCCTGCTTGTGTGGGCATGACTATTGAAGAAGCAAAGAACTTGGGCCATTTTGTATGTTCCGAGTGTCCATCTGTCATTTACTCGAAGAAACCCCAGGCTACATATCCTGTACCACTGCCATTTTATGGCCCGCAGGTGACTGTAACGGACGAATTTCAGCAAGATATTGAACAGAGATTAACTAAAATGGAGAAGTCACTAGAAGAATGCAACAAGCTTTTGGAAGCTTTAATGCGAAGGCTATCGAAGTATCAATGA 744 0.4261 MAKKKPLSYTTIRGTNKIVKVGDCVFMRPTLSNVRKLPRVAQVEKIEHDNRNNVNVSIRWYYRPEESIGGRRQFHGVKELLLSDQYDVQSAHNIIGKCVVHSYNNDTKLENIRPEDYYWRFEYKAATGTFMPDFVAVYCKCEMPRNPDDFMVHCKGCQNWYHPACVGMTIEEAKNLGHFVCSECPSVIYSKKPQATYPVPLPFYGPQVTVTDEFQQDIEQRLTKMEKSLEECNKLLEALMRRLSKYQ* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0897 247 SMART BAH_4 17 134 IPR001025 GO:0003682
Lan5g0897 247 SUPERFAMILY FYVE/PHD zinc finger 130 186 IPR011011 -
Lan5g0897 247 PANTHER BNAC03G64850D PROTEIN 4 197 IPR045205 GO:0006325|GO:0035064
Lan5g0897 247 ProSiteProfiles Zinc finger PHD-type profile. 136 187 IPR019787 -
Lan5g0897 247 PANTHER OS08G0421900 PROTEIN 4 197 - -
Lan5g0897 247 ProSitePatterns Zinc finger PHD-type signature. 139 184 IPR019786 -
Lan5g0897 247 Gene3D - 1 130 IPR043151 -
Lan5g0897 247 SMART PHD_3 138 185 IPR001965 -
Lan5g0897 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 196 IPR013083 -
Lan5g0897 247 Coils Coil 215 247 - -
Lan5g0897 247 Pfam PHD-finger 138 184 IPR019787 -
Lan5g0897 247 Pfam BAH domain 19 132 IPR001025 GO:0003682
Lan5g0897 247 ProSiteProfiles BAH domain profile. 17 134 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0897 Lan-Chr5 22006702 22010462 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lan5g0897 BAH 1.5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0897 K25868 - gmx:100800993 306.605