Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan5g0889 ATGATTATTAGCAACGGAGTTTGCAGTTTTCGCACCTGCCTCCGTCTACCGGAGATACCCTTGCTCCGTTCATCACCGCCGCTGTCATCCTTCTCTCATCTCCGGCGCCGGTTTTTGGCCACTGCCGTTAACGCTGCAACGAGGAATAAGGAGAAAGTGATTGTAATTTCTGGACCTACAGGTTCTGGTAAGAGCCGGCTTGCATTGGAGCTTGCAAAGCGTCTCAATGGAGAAATCGTTAGTGCAGATTCTGTTCAGGTATATCGGGGTCTTGATGTTGGATCTGCAAAGCCTTCCGCAACTGAAAGAAAGGAGGTACCTCATCATCTGATTGACATACTACACCCATCTGAAGACTATTCTGTTGGACAGTTTTTTGAGGATGCGAGGCATGCTACAAGATGTATTCTTGATAATGGTCGTGTTCCCATAGTGGTCGGAGGTACTGGATTGTATTTAAGATGGTTCATATATGGAAAACCAGATGTGCCTAAAGCCTCTCCGGAGATCATATCAGAAGCATATCTGGAGTTAGCTGAGCTTCAGAGAAATGAAGACTGGGATGCAGCTGTGCAGTTGGTGGTAAAAGCAGGTGATCCGAAGGCTCAATTTTTAAAATTGAATGATTGGTATCGATTGCGGCGTAGCTTAGAGGTTATTAAGTCTAGTGGATCACCTCCTTCCGCTTTTCGGGTACCATATGATTCTTTCAGGGAAAAGGATGATTGTAGTGCTGCTGATGTTTCAGAGTCATCTGAGGTGAACACTTATGGTGATGCCATGGAGGAAACCAAGTCGGCAGACTTAGAATACGAGTTTATGTGTTTTTTCCTTTCTAACCAAAGAGTTGACCTCTATCGAGCAATTGATTATCGGTGTGAAGATATGTTATTAGGAAGGGATGGGATTCTGTCCGAGGCTCAATGGCTTCTTAATATGGGTCTTCTTCCAAATTGCAATTCTGCTACACGAGCAATTGGTTACAGACAAGGCATGGAGTACTTACTAAGATGCAGAGAGCAAGGGGGTCAGAGTTCAGTTGGGGAATTTCATAAATTCTTATCTGAATTTCGCAAAGCATCACGGAATTTTGCAAAAAGACAGTTGACATGGTTTCGCAATGAAAGTATATACCAATGGCTTGATGCTTCTAAACCTCTGGAAACAGTTTTGAACTTCATTCATGATGCATACCGTGATCAGAGTGGAAGTATTGTTGTGCCTGAAAACCTAAGAATGGCGAGAGATATTTCTAACGGCCGGGAAGCTTTTTTACTCAAGTCTTACCACACCCAAAATAGGCATTTTTTGAACCGAGATGATTGTTCTCCTATACTGGACTGGATAAGCGAGAGTCAAAAGTTGAAGGCATAG 1374 0.4352 MIISNGVCSFRTCLRLPEIPLLRSSPPLSSFSHLRRRFLATAVNAATRNKEKVIVISGPTGSGKSRLALELAKRLNGEIVSADSVQVYRGLDVGSAKPSATERKEVPHHLIDILHPSEDYSVGQFFEDARHATRCILDNGRVPIVVGGTGLYLRWFIYGKPDVPKASPEIISEAYLELAELQRNEDWDAAVQLVVKAGDPKAQFLKLNDWYRLRRSLEVIKSSGSPPSAFRVPYDSFREKDDCSAADVSESSEVNTYGDAMEETKSADLEYEFMCFFLSNQRVDLYRAIDYRCEDMLLGRDGILSEAQWLLNMGLLPNCNSATRAIGYRQGMEYLLRCREQGGQSSVGEFHKFLSEFRKASRNFAKRQLTWFRNESIYQWLDASKPLETVLNFIHDAYRDQSGSIVVPENLRMARDISNGREAFLLKSYHTQNRHFLNRDDCSPILDWISESQKLKA* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan5g0889 457 Gene3D - 50 441 IPR027417 -
Lan5g0889 457 TIGRFAM miaA: tRNA dimethylallyltransferase 53 230 IPR018022 GO:0008033
Lan5g0889 457 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 42 452 IPR039657 -
Lan5g0889 457 Hamap tRNA dimethylallyltransferase [miaA]. 53 392 IPR018022 GO:0008033
Lan5g0889 457 Pfam IPP transferase 86 375 - -
Lan5g0889 457 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 9 42 452 - -
Lan5g0889 457 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 365 IPR027417 -
Lan5g0889 457 Gene3D - 161 232 - -
Lan5g0889 457 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 53 185 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan5g0889 Lan-Chr5 21892607 21904882 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan5g0889 56 157 C2H2 Transcription Factor Family AT2G27760 38.235 3.22e-17 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan5g0889 K00791 - gmx:100808814 707.597